have you tried running ambpdb from the unix shell instead of inside xleap?
On Tue, Jul 1, 2008 at 4:36 AM, Anna Reymer <reymer.chalmers.se> wrote:
> Dear All,
> I am doing the loop modelling and have the following problem running
> ambpdb from xleap window in AMBER10:
>
>>ambpdb -p myfile.prmtop < myfile.inpcrd > myfile.pdb
> ERROR: syntax error
>
>
> The myfile.prmtop and myfile.inpcrd were created properly.
> Any suggestions?
>
> regards,
> Anna
>
> -----------
> Anna Reymer, PhD student
> Physical Chemistry,
> Department of Chemical and Biological Engineering
> Chalmers University of Technology
> Kemivägen 10
> SE-412 96 Gothenburg
> Sweden
>
> Phone: +46-(0)31-7722815
>
> -----------------------------------------------------------------------
> The AMBER Mail Reflector
> To post, send mail to amber.scripps.edu
> To unsubscribe, send "unsubscribe amber" (in the *body* of the email)
> to majordomo.scripps.edu
>
-----------------------------------------------------------------------
The AMBER Mail Reflector
To post, send mail to amber.scripps.edu
To unsubscribe, send "unsubscribe amber" (in the *body* of the email)
to majordomo.scripps.edu
Received on Wed Jul 02 2008 - 06:07:38 PDT
