Hello,
NAMD is able to read directly the prepared amber topology and inpcrd files.
for example:
amber on
parmfile ***.parm7
ambercoor ***.inpcrd or ***.rst
hope this helps.
balazs
tinni sona wrote:
> Hi All,
>
> I want to perform the MD simulation of protein-carbohydrate complex
> using NAMD. My force field is AMBER. I'm failed to generate the
> required psf file for the system using the AMBER and GLYCAM topology
> files for protein and carbohydrate respectively.
>
> Can anyone please suggest me how to generate the psf file using
> topology file taken from AMBER?
> I would really appreciate if you could respond.
>
> Thanks,
> Madhurima
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Received on Sun Jul 20 2008 - 06:07:40 PDT
