Dear AMBER Users,
I am finding difficult to make CA RMSD matrix Plot from the distance matrix
of all CA atoms.
The inputs I have in ptraj is as follows:
reference inpcrd
strip :WAT
strip :Cl-
rms reference :1-100.CA
center :1-100 mass origin
image origin center
matrix dist .CA out distmat.dat byres mass
Now I have the distmat.dat file, from this how to get the CA RMSD matrix ?
Can anyone help me in this regard ?
Thanks in advance
--
Siddharth Rastogi
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Received on Sun Jul 13 2008 - 06:07:03 PDT
