RE: AMBER: analysing normal modes

From: Vahdati N. <nadiav.soton.ac.uk>
Date: Thu, 10 Jul 2008 13:49:15 +0100

Dear Chris,

Is there a need for me to install MDDisplay, or is NMDisplay completely independent?

Thank you,
Nadia

________________________________________
From: owner-amber.scripps.edu [owner-amber.scripps.edu] On Behalf Of Chris Moth [chris.moth.vanderbilt.edu]
Sent: 09 July 2008 20:45
To: amber.scripps.edu
Cc: amber.scripps.edu
Subject: AMBER: analysing normal modes

NMDisplay, a sister product for MDDisplay that I am just about to publish
to the list, does this quite nicely.

What platform do you use? I'll send you the new files you need and draft
instructions.

http://structbio.vanderbilt.edu/~mothcw/mddisplay/

> Dear amber users,
>
> Apart from IED, are there any other tools or scripts that can be used to
> generate frames along normal modes caluclated by nmode (amber) or NAB?
> I can use ptraj to generate fluctuation plots along the normal modes but I
> am interested in generating frames to visualise.
>
> Thank you in advance for your help,
>
> Nadia
>
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Received on Sun Jul 13 2008 - 06:07:27 PDT
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