AMBER: analysing normal modes

From: Vahdati N. <>
Date: Tue, 8 Jul 2008 19:03:39 +0100

Dear amber users,

Apart from IED, are there any other tools or scripts that can be used to generate frames along normal modes caluclated by nmode (amber) or NAB?
I can use ptraj to generate fluctuation plots along the normal modes but I am interested in generating frames to visualise.

Thank you in advance for your help,


The AMBER Mail Reflector
To post, send mail to
To unsubscribe, send "unsubscribe amber" (in the *body* of the email)
Received on Wed Jul 09 2008 - 06:07:44 PDT
Custom Search