Re: AMBER: antechamber and charmm

From: Junmei Wang <junmwang.gmail.com>
Date: Thu, 17 Jul 2008 09:33:23 -0500

Hi, Alan,
That's bug has been corrected in the next version of ambertools.

Best

Junmei

On Thu, Jul 10, 2008 at 4:43 AM, Alan <alanwilter.gmail.com> wrote:

> Hi List,
>
> I used antechamber to generate topologies for charmm. Looking at *.prm
> I found weird this:
>
> c3 ca ca ca 1.100 0 180.0
>
> while from gaff.dat, it is:
>
> ca-ca-ca-c3 1.1 180. 2.
>
> Basically period 2 from gaff is getting 0 in charmm file. It happend
> to all my impropers. Any special reason for that?
>
> Many thanks in advance.
> Alan
>
> --
> Alan Wilter S. da Silva, D.Sc. - CCPN Research Associate
> Department of Biochemistry, University of Cambridge.
> 80 Tennis Court Road, Cambridge CB2 1GA, UK.
> >>http://www.bio.cam.ac.uk/~awd28 <http://www.bio.cam.ac.uk/%7Eawd28><<
> -----------------------------------------------------------------------
> The AMBER Mail Reflector
> To post, send mail to amber.scripps.edu
> To unsubscribe, send "unsubscribe amber" (in the *body* of the email)
> to majordomo.scripps.edu
>

-----------------------------------------------------------------------
The AMBER Mail Reflector
To post, send mail to amber.scripps.edu
To unsubscribe, send "unsubscribe amber" (in the *body* of the email)
      to majordomo.scripps.edu
Received on Sun Jul 20 2008 - 06:07:26 PDT
Custom Search