Dear AMBER developers,
I˘m studying on an example MD simulation about a small formamide molecule . I˘m using my own force field parameters since my molecule is not described enough with the GAFF. Apart from simulation of small formamide molecule in Amber , my goal is to increase molecule numbers and run MD simulation with big molecule numbers like 500 or 1000 in Amber . And I thought that I should use Antechamber tool but I˘m not sure about that . So I want to get more information about this matter.
How can I use big molecule numbers for the simulation ? Could you give me the information about the basics of this procedure?
Thanks for your help!
Best regards,
Adrien
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Received on Sun Jul 27 2008 - 06:07:38 PDT
