Re: AMBER: Question about loading frcmod.ionsjc_tip3p in xleap

From: David A. Case <case.scripps.edu>
Date: Thu, 10 Jul 2008 21:42:28 -0700

On Thu, Jul 10, 2008, Thomas Cheatham III wrote:
>
> ...
> > (UNKNOWN ATOM TYPE: Li+)
> > (UNKNOWN ATOM TYPE: Na+)
> > (UNKNOWN ATOM TYPE: K+)
> > (UNKNOWN ATOM TYPE: Rb+)
> > (UNKNOWN ATOM TYPE: Cs+)
> > (UNKNOWN ATOM TYPE: F-)
> > (UNKNOWN ATOM TYPE: Cl-)
> > (UNKNOWN ATOM TYPE: Br-)
> > (UNKNOWN ATOM TYPE: I-)

I think you just need to have the appropriate lines in the addAtomTypes
lines in leaprc files. And I don't think the lack of such lines causes
any problems, but it is good to double-check that.

...dac

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Received on Sun Jul 13 2008 - 06:07:40 PDT
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