Amber Archive Feb 2007 By Thread
- AMBER: format of .xyz files and pdb Gobind Singh Bisht (Wed Jan 31 2007 - 14:05:24 PST)
- AMBER: Still puzzled about this virial computation David Cerutti (Thu Feb 01 2007 - 00:00:10 PST)
- Re: AMBER: Still puzzled about this virial computation Robert Duke (Thu Feb 01 2007 - 07:35:25 PST)
- Re: AMBER: Still puzzled about this virial computation Robert Duke (Thu Feb 01 2007 - 08:16:51 PST)
- Re: AMBER: Still puzzled about this virial computation Robert Duke (Thu Feb 01 2007 - 07:35:25 PST)
- AMBER: xleap deepti nayar (Thu Feb 01 2007 - 00:04:09 PST)
- RE: AMBER: xleap Ross Walker (Thu Feb 01 2007 - 08:18:19 PST)
- Re: AMBER: xleap David A. Case (Thu Feb 01 2007 - 08:58:40 PST)
- AMBER: subscribe amber Stéphane Téletchéa (Thu Feb 01 2007 - 07:11:25 PST)
- Re: AMBER: mm_pbsa Array reference error Scott Pendley (Thu Feb 01 2007 - 09:05:27 PST)
- AMBER: workaround for ibm xlf90 powerpc FORTRAN compiler: -q64 and -O3 yield Run.dhfr.min failure Chris Moth (Thu Feb 01 2007 - 10:33:33 PST)
- Re: AMBER: mm_pbsa Array reference error Syed Tarique Moin (Thu Feb 01 2007 - 20:43:50 PST)
- Re: AMBER: mm_pbsa Array reference error Scott Pendley (Fri Feb 02 2007 - 09:09:50 PST)
- Re: AMBER: mm_pbsa Array reference error Syed Tarique Moin (Sat Feb 03 2007 - 21:51:27 PST)
- Re: AMBER: mm_pbsa Array reference error Scott Pendley (Fri Feb 02 2007 - 09:09:50 PST)
- Re: AMBER: Ptraj: watershell and distance Thomas Cheatham III (Thu Feb 01 2007 - 10:46:04 PST)
- AMBER: Example needed for addAtomType command Kara Di Giorgio (Thu Feb 01 2007 - 13:26:12 PST)
- Re: AMBER: Example needed for addAtomType command David A. Case (Thu Feb 01 2007 - 14:30:03 PST)
- Re: AMBER: Example needed for addAtomType command Kara Di Giorgio (Thu Feb 01 2007 - 15:02:39 PST)
- Re: AMBER: Example needed for addAtomType command David A. Case (Thu Feb 01 2007 - 14:30:03 PST)
- AMBER: ab initio modeling using Amber snoze pa (Thu Feb 01 2007 - 18:59:17 PST)
- Re: AMBER: ab initio modeling using Amber Gustavo Seabra (Thu Feb 01 2007 - 20:07:45 PST)
- Re: AMBER: some questions about minimization and MD of DNA duplex with sander Chengwen Chen (Thu Feb 01 2007 - 21:40:11 PST)
- RE: AMBER: some questions about minimization and MD of DNA duplex with sander Ross Walker (Fri Feb 02 2007 - 09:23:02 PST)
- Re: AMBER: some questions about minimization and MD of DNA duplex with sander Chengwen Chen (Mon Feb 05 2007 - 21:43:29 PST)
- RE: AMBER: some questions about minimization and MD of DNA duplex with sander Ross Walker (Fri Feb 02 2007 - 09:23:02 PST)
- AMBER: Problem with paralell installation Martin Stennett (Fri Feb 02 2007 - 00:22:25 PST)
- RE: AMBER: Problem with paralell installation Ross Walker (Fri Feb 02 2007 - 07:21:16 PST)
- AMBER: RESP Charges for Charged Carboxylate in Organic Ligand Akshay Patny (Fri Feb 02 2007 - 08:05:35 PST)
- Re: AMBER: RESP Charges for Charged Carboxylate in Organic Ligand HL Eastwood (Fri Feb 02 2007 - 09:40:10 PST)
- Re: AMBER: RESP Charges for Charged Carboxylate in Organic Ligand HL Eastwood (Fri Feb 02 2007 - 09:41:50 PST)
- AMBER: iRED and corrired Francois Theillet (Fri Feb 02 2007 - 09:07:47 PST)
- Re: AMBER: iRED and corrired David A. Case (Fri Feb 02 2007 - 10:57:43 PST)
- Re: AMBER: iRED and corrired Francois Theillet (Fri Feb 02 2007 - 13:05:41 PST)
- Re: AMBER: iRED and corrired Gohlke.bioinformatik.uni-frankfurt.de (Sun Feb 04 2007 - 05:01:17 PST)
- Re: AMBER: iRED and corrired Holger Gohlke (Mon Feb 05 2007 - 08:09:15 PST)
- Re: AMBER: iRED and corrired David A. Case (Fri Feb 02 2007 - 10:57:43 PST)
- AMBER: calculating distance between two atoms bertrand russell (Fri Feb 02 2007 - 09:49:07 PST)
- Re: AMBER: calculating distance between two atoms Carlos Simmerling (Fri Feb 02 2007 - 13:42:41 PST)
- Re: AMBER: calculating distance between two atoms bertrand russell (Mon Feb 05 2007 - 04:22:16 PST)
- Re: AMBER: calculating distance between two atoms Carlos Simmerling (Mon Feb 05 2007 - 04:55:19 PST)
- Re: AMBER: calculating distance between two atoms bertrand russell (Mon Feb 05 2007 - 04:22:16 PST)
- Re: AMBER: calculating distance between two atoms Carlos Simmerling (Fri Feb 02 2007 - 13:42:41 PST)
- AMBER: How do I make and enter new ff parameters into AMBER MARY O'CONNOR (Fri Feb 02 2007 - 11:35:20 PST)
- AMBER: How do I make and enter new ff parameters into AMBER HL Eastwood (Fri Feb 02 2007 - 13:26:46 PST)
- AMBER: angle command in Ptraj Esther Brugger (Fri Feb 02 2007 - 16:20:34 PST)
- Re: AMBER: angle command in Ptraj Esther Brugger (Fri Feb 02 2007 - 16:36:01 PST)
- Re: AMBER: angle command in Ptraj Carlos Simmerling (Sat Feb 03 2007 - 05:17:26 PST)
- Re: AMBER: angle command in Ptraj Esther Brugger (Fri Feb 02 2007 - 16:36:01 PST)
- AMBER: addions Amit Kumar (Sat Feb 03 2007 - 05:17:57 PST)
- Re: AMBER: addions David A. Case (Sun Feb 04 2007 - 09:33:37 PST)
- AMBER: ptraj hbond jacopo.sgrignani.unifi.it (Sat Feb 03 2007 - 08:28:20 PST)
- AMBER: equilibration in explicit solvent Amarda Shehu (Sun Feb 04 2007 - 09:40:12 PST)
- Re: AMBER: equilibration in explicit solvent David A. Case (Sun Feb 04 2007 - 10:21:18 PST)
- Re: AMBER: equilibration in explicit solvent Amarda Shehu (Sun Feb 04 2007 - 10:32:05 PST)
- Re: AMBER: equilibration in explicit solvent David A. Case (Sun Feb 04 2007 - 21:27:44 PST)
- Re: AMBER: equilibration in explicit solvent Amarda Shehu (Thu Feb 08 2007 - 09:37:39 PST)
- Re: AMBER: equilibration in explicit solvent Amarda Shehu (Thu Feb 08 2007 - 11:48:23 PST)
- Re: AMBER: equilibration in explicit solvent Ilyas Yildirim (Thu Feb 08 2007 - 12:16:10 PST)
- Re: AMBER: equilibration in explicit solvent Carlos Simmerling (Mon Feb 05 2007 - 10:35:30 PST)
- Re: AMBER: equilibration in explicit solvent Amarda Shehu (Sun Feb 04 2007 - 10:32:05 PST)
- RE: AMBER: equilibration in explicit solvent Yong Duan (Sun Feb 04 2007 - 11:07:30 PST)
- Re: AMBER: equilibration in explicit solvent Ilyas Yildirim (Sun Feb 04 2007 - 21:13:48 PST)
- Re: AMBER: equilibration in explicit solvent David A. Case (Sun Feb 04 2007 - 10:21:18 PST)
- AMBER: Calculate force constants Markus Weingarth (Sun Feb 04 2007 - 14:13:28 PST)
- AMBER: force fields deepti nayar (Sun Feb 04 2007 - 23:05:09 PST)
- Re: AMBER: force fields Carlos Simmerling (Mon Feb 05 2007 - 04:49:29 PST)
- RE: AMBER: force fields Yong Duan (Mon Feb 05 2007 - 09:15:10 PST)
- Re: AMBER: force fields deepti nayar (Mon Feb 05 2007 - 21:37:05 PST)
- RE: AMBER: force fields Yong Duan (Mon Feb 05 2007 - 22:24:01 PST)
- Re: AMBER: force fields deepti nayar (Tue Feb 06 2007 - 00:20:05 PST)
- Re: AMBER: force fields deepti nayar (Tue Feb 06 2007 - 02:33:37 PST)
- RE: AMBER: force fields Yong Duan (Tue Feb 06 2007 - 08:11:20 PST)
- Re: AMBER: force fields Carlos Simmerling (Tue Feb 06 2007 - 04:50:42 PST)
- Re: AMBER: force fields deepti nayar (Mon Feb 05 2007 - 21:37:05 PST)
- RE: AMBER: force fields Yong Duan (Tue Feb 06 2007 - 08:13:58 PST)
- AMBER: replacement of mutated atoms in protein structure bertrand russell (Mon Feb 05 2007 - 02:42:37 PST)
- AMBER: MAXGRP error message Alexander Steudle (Mon Feb 05 2007 - 06:03:45 PST)
- Re: AMBER: MAXGRP error message David A. Case (Wed Feb 07 2007 - 09:43:33 PST)
- AMBER: problem in xleap WANG,YING (Mon Feb 05 2007 - 07:45:14 PST)
- Re: AMBER: problem in xleap Steven Winfield (Mon Feb 05 2007 - 08:06:12 PST)
- Re: AMBER: problem in xleap WANG,YING (Tue Feb 06 2007 - 15:36:29 PST)
- Re: AMBER: problem in xleap Carlos Simmerling (Tue Feb 06 2007 - 15:46:29 PST)
- Re: AMBER: problem in xleap WANG,YING (Tue Feb 06 2007 - 17:12:54 PST)
- AMBER: Force fields for iron MARY O'CONNOR (Mon Feb 05 2007 - 08:19:52 PST)
- AMBER: positive binding energy saurabh agrawal (Mon Feb 05 2007 - 09:30:46 PST)
- AMBER: Tutorial for chemical shift calculation? Mike Summers (Mon Feb 05 2007 - 17:04:48 PST)
- Re: AMBER: Tutorial for chemical shift calculation? David A. Case (Tue Feb 06 2007 - 08:25:40 PST)
- Re: AMBER: Tutorial for chemical shift calculation? Mike Summers (Tue Feb 06 2007 - 10:36:05 PST)
- AMBER: Pseudo-CSA in Amber? Mike Summers (Mon Feb 19 2007 - 06:30:13 PST)
- Re: AMBER: Pseudo-CSA in Amber? David A. Case (Wed Feb 21 2007 - 16:04:32 PST)
- Re: AMBER: Tutorial for chemical shift calculation? David A. Case (Tue Feb 06 2007 - 08:25:40 PST)
- AMBER: Link to Modified NA bases files Seth Lilavivat (Mon Feb 05 2007 - 14:22:50 PST)
- Re: AMBER: Link to Modified NA bases files Ilyas Yildirim (Mon Feb 05 2007 - 20:05:21 PST)
- AMBER: Glycam Beale, John (Tue Feb 06 2007 - 05:07:22 PST)
- Re: AMBER: Glycam David A. Case (Tue Feb 06 2007 - 08:04:21 PST)
- Re: AMBER: Glycam kkirschn.hamilton.edu (Tue Feb 06 2007 - 06:44:52 PST)
- AMBER: MM-PBSA questions/clarifications Rima Chaudhuri (Tue Feb 06 2007 - 10:51:08 PST)
- Re: AMBER: MM-PBSA questions/clarifications vanessa wai (Tue Feb 13 2007 - 02:36:27 PST)
- AMBER: Compile Amber9 for MVAPICH Mike Hanby (Tue Feb 06 2007 - 11:51:18 PST)
- Re: AMBER: Compile Amber9 for MVAPICH David A. Case (Tue Feb 06 2007 - 12:23:07 PST)
- AMBER: compiling AMBER9 on Mac OS X Tiger (Intel) Nevin Gerek (Tue Feb 06 2007 - 15:08:08 PST)
- Re: AMBER: compiling AMBER9 on Mac OS X Tiger (Intel) David A. Case (Tue Feb 06 2007 - 16:22:03 PST)
- Re: AMBER: compiling AMBER9 on Mac OS X Tiger (Intel) Z. Nevin Gerek (Wed Feb 07 2007 - 09:20:12 PST)
- Re: AMBER: compiling AMBER9 on Mac OS X Tiger (Intel) Mark Williamson (Wed Feb 07 2007 - 09:45:29 PST)
- Re: AMBER: compiling AMBER9 on Mac OS X Tiger (Intel) Z. Nevin Gerek (Wed Feb 07 2007 - 09:57:54 PST)
- Re: AMBER: compiling AMBER9 on Mac OS X Tiger (Intel) Scott Brozell (Wed Feb 07 2007 - 09:59:41 PST)
- Re: AMBER: compiling AMBER9 on Mac OS X Tiger (Intel) Z. Nevin Gerek (Wed Feb 07 2007 - 09:20:12 PST)
- Re: AMBER: compiling AMBER9 on Mac OS X Tiger (Intel) Mike Summers (Tue Feb 06 2007 - 18:30:22 PST)
- Re: AMBER: compiling AMBER9 on Mac OS X Tiger (Intel) David A. Case (Tue Feb 06 2007 - 16:22:03 PST)
- AMBER: Missing Value for MM ELE Rima Chaudhuri (Tue Feb 06 2007 - 15:26:08 PST)
- AMBER: side chain orientation Esther Brugger (Tue Feb 06 2007 - 15:36:48 PST)
- Re: AMBER: side chain orientation Fenghui Fan (Tue Feb 06 2007 - 16:11:47 PST)
- Re: AMBER: side chain orientation Esther Brugger (Wed Feb 07 2007 - 07:23:55 PST)
- Re: AMBER: side chain orientation Ilyas Yildirim (Wed Feb 07 2007 - 10:00:37 PST)
- Re: AMBER: side chain orientation Esther Brugger (Wed Feb 07 2007 - 07:23:55 PST)
- Re: AMBER: side chain orientation Fenghui Fan (Tue Feb 06 2007 - 16:11:47 PST)
- AMBER: trajectory problem Miguel Ferreira (Tue Feb 06 2007 - 20:52:25 PST)
- Re: AMBER: trajectory problem David A. Case (Wed Feb 07 2007 - 09:52:59 PST)
- AMBER: antechamber for topology file deepti nayar (Wed Feb 07 2007 - 02:42:51 PST)
- Re: AMBER: antechamber for topology file Carlos Simmerling (Wed Feb 07 2007 - 04:32:52 PST)
- Re: AMBER: antechamber for topology file FyD (Wed Feb 07 2007 - 05:28:58 PST)
- Re: AMBER: antechamber for topology file deepti nayar (Wed Feb 07 2007 - 22:07:22 PST)
- RE: AMBER: antechamber for topology file Akshay Patny (Wed Feb 07 2007 - 22:28:50 PST)
- Re: AMBER: antechamber for topology file deepti nayar (Wed Feb 07 2007 - 22:55:35 PST)
- Re: AMBER: antechamber for topology file David A. Case (Wed Feb 07 2007 - 23:08:04 PST)
- Re: AMBER: antechamber for topology file FyD (Thu Feb 08 2007 - 00:10:29 PST)
- Re: AMBER: antechamber for topology file deepti nayar (Wed Feb 07 2007 - 22:55:35 PST)
- AMBER: Help!! I cannot perform the ambpdb WANG,YING (Wed Feb 07 2007 - 06:03:07 PST)
- Re: AMBER: Help!! I cannot perform the ambpdb Mark Williamson (Wed Feb 07 2007 - 08:08:41 PST)
- RE: AMBER: Help!! I cannot perform the ambpdb Ross Walker (Wed Feb 07 2007 - 07:21:13 PST)
- Re: AMBER: Help!! I cannot perform the ambpdb WANG,YING (Wed Feb 07 2007 - 11:49:46 PST)
- Re: AMBER: Help!! I cannot perform the ambpdb Mark Williamson (Wed Feb 07 2007 - 12:25:19 PST)
- RE: AMBER: Help!! I cannot perform the ambpdb WANG,YING (Wed Feb 07 2007 - 12:19:29 PST)
- Re: AMBER: Help!! I cannot perform the ambpdb WANG,YING (Wed Feb 07 2007 - 13:23:16 PST)
- AMBER: Strange behavior on g95 compile. Martin Stennett (Wed Feb 07 2007 - 08:00:23 PST)
- Re: AMBER: Strange behavior on g95 compile. Mark Williamson (Wed Feb 07 2007 - 08:18:16 PST)
- RE: AMBER: Strange behavior on g95 compile. Ross Walker (Wed Feb 07 2007 - 08:17:37 PST)
- Re: AMBER: Strange behavior on g95 compile. Seth Hayik (Wed Feb 07 2007 - 08:31:50 PST)
- AMBER: problem with AMBER8 installation Subhasish Chatterjee (Wed Feb 07 2007 - 09:50:48 PST)
- RE: AMBER: problem with AMBER8 installation Ross Walker (Wed Feb 07 2007 - 10:06:42 PST)
- Re: AMBER: problem with AMBER8 installation David A. Case (Wed Feb 07 2007 - 10:10:51 PST)
- AMBER: Compiling Amber 8 on SuSE 10.2 Seth Lilavivat (Wed Feb 07 2007 - 11:50:12 PST)
- Re: AMBER: Compiling Amber 8 on SuSE 10.2 Cenk Andac (Wed Feb 07 2007 - 12:02:17 PST)
- Re: AMBER: Compiling Amber 8 on SuSE 10.2 Seth Lilavivat (Wed Feb 07 2007 - 14:35:27 PST)
- Re: AMBER: Compiling Amber 8 on SuSE 10.2 Cenk Andac (Wed Feb 07 2007 - 12:02:17 PST)
- AMBER: Membrane Simulation: NPT issues Akshay Patny (Wed Feb 07 2007 - 10:29:36 PST)
- AMBER: Binding free energy calculation - MM-pbsa Rima Chaudhuri (Wed Feb 07 2007 - 12:55:26 PST)
- AMBER: Membrane Simulation: NPT Issues Akshay Patny (Wed Feb 07 2007 - 09:28:05 PST)
- RE: AMBER: Membrane Simulation: NPT Issues Akshay Patny (Mon Feb 12 2007 - 07:33:40 PST)
- Re: AMBER: Membrane Simulation: NPT Issues David A. Case (Wed Feb 14 2007 - 15:04:47 PST)
- RE: AMBER: Membrane Simulation: NPT Issues Akshay Patny (Thu Feb 15 2007 - 08:54:02 PST)
- Re: AMBER: Membrane Simulation: NPT Issues David A. Case (Wed Feb 14 2007 - 15:04:47 PST)
- RE: AMBER: Membrane Simulation: NPT Issues Akshay Patny (Mon Feb 12 2007 - 07:33:40 PST)
- AMBER: Missing values for MM ELE (MM-PBSA)..help!! Rima Chaudhuri (Wed Feb 07 2007 - 08:21:38 PST)
- AMBER: Compiling Amber 7 David J. Powers (Thu Feb 08 2007 - 07:13:00 PST)
- RE: AMBER: Compiling Amber 7 Ross Walker (Thu Feb 08 2007 - 08:30:30 PST)
- RE: AMBER: Compiling Amber 7 David J. Powers (Thu Feb 08 2007 - 11:27:41 PST)
- RE: AMBER: Compiling Amber 7 David J. Powers (Sat Feb 10 2007 - 07:59:42 PST)
- RE: AMBER: Compiling Amber 7 Ross Walker (Sat Feb 10 2007 - 09:11:54 PST)
- RE: AMBER: Compiling Amber 7 Ross Walker (Thu Feb 08 2007 - 08:30:30 PST)
- AMBER: H-Bond Esther Brugger (Thu Feb 08 2007 - 09:06:57 PST)
- AMBER: Protonation of Aspartate sai vikram (Thu Feb 08 2007 - 09:12:03 PST)
- Re: AMBER: Protonation of Aspartate Adrian Roitberg (Thu Feb 08 2007 - 09:17:11 PST)
- AMBER: Calcium and peptides Beale, John (Thu Feb 08 2007 - 10:20:30 PST)
- AMBER: Compiling AMBER 8 on RHEL4 AMD64 Seth Lilavivat (Thu Feb 08 2007 - 11:53:44 PST)
- Re: AMBER: Compiling AMBER 8 on RHEL4 AMD64 David A. Case (Thu Feb 08 2007 - 22:22:01 PST)
- AMBER: Energy calculation by Anal Alexander Rubinstein (Thu Feb 08 2007 - 12:11:16 PST)
- AMBER: phe-phe prep file deepti nayar (Thu Feb 08 2007 - 22:09:15 PST)
- AMBER: assigning charges to a prepi file deepti nayar (Thu Feb 08 2007 - 22:38:27 PST)
- Re: AMBER: assigning charges to a prepi file David A. Case (Thu Feb 08 2007 - 22:58:08 PST)
- AMBER: question about distance restraint on terminal WC of DNA duplex (AMBER9) Chengwen Chen (Fri Feb 09 2007 - 00:25:00 PST)
- Re: AMBER: question about distance restraint on terminal WC of DNA duplex (AMBER9) David A. Case (Sat Feb 10 2007 - 22:57:27 PST)
- AMBER: Umbrella sampling Franck Vendeix (Fri Feb 09 2007 - 06:37:35 PST)
- Re: AMBER: Umbrella sampling Jerome.GOLEBIOWSKI.unice.fr (Mon Feb 12 2007 - 01:33:18 PST)
- Re: AMBER: Umbrella sampling Franck Vendeix (Wed Feb 14 2007 - 19:13:31 PST)
- Re: AMBER: Umbrella sampling Jerome.GOLEBIOWSKI.unice.fr (Mon Feb 12 2007 - 01:33:18 PST)
- AMBER: amber9 possible failure tgtmd jlalonde (Fri Feb 09 2007 - 08:19:19 PST)
- Re: AMBER: amber9 possible failure tgtmd David A. Case (Mon Feb 12 2007 - 21:58:15 PST)
- AMBER: problem with sander Seth Lilavivat (Fri Feb 09 2007 - 09:43:14 PST)
- Re: AMBER: problem with sander David A. Case (Sat Feb 10 2007 - 02:08:01 PST)
- Re: AMBER: problem with sander Seth Lilavivat (Fri Feb 09 2007 - 11:35:34 PST)
- Re: AMBER: problem with sander David A. Case (Sat Feb 10 2007 - 02:08:01 PST)
- AMBER: ptraj dipole calculation in QMMM simulation Evan Kelly (Fri Feb 09 2007 - 10:36:30 PST)
- RE: AMBER: ptraj dipole calculation in QMMM simulation Ross Walker (Fri Feb 09 2007 - 10:53:30 PST)
- Re: AMBER: ptraj dipole calculation in QMMM simulation Gustavo Seabra (Fri Feb 09 2007 - 10:54:04 PST)
- AMBER: Heating the system prior to production run Ilyas Yildirim (Fri Feb 09 2007 - 13:28:08 PST)
- AMBER: Umbrella sampling - Tutorial bertrand russell (Fri Feb 09 2007 - 23:35:31 PST)
- AMBER: extracting coordinates from crd file gurpreet singh (Sat Feb 10 2007 - 00:40:44 PST)
- Re: AMBER: extracting coordinates from crd file Ilyas Yildirim (Sat Feb 10 2007 - 00:59:04 PST)
- AMBER: extracting coordinate from crd file gurpreet singh (Sat Feb 10 2007 - 02:05:20 PST)
- Re: AMBER: extracting coordinate from crd file Amit Kumar (Sat Feb 10 2007 - 07:31:35 PST)
- Re: AMBER: extracting coordinate from crd file David A. Case (Sat Feb 10 2007 - 08:08:28 PST)
- AMBER: atomicfluct Catein Catherine (Sun Feb 11 2007 - 21:45:40 PST)
- RE: AMBER: atomicfluct Rafi Ahmad (Mon Feb 12 2007 - 00:32:37 PST)
- RE: AMBER: atomicfluct Catein Catherine (Tue Feb 13 2007 - 19:36:35 PST)
- AMBER: Help: 1 ns for implicit solvent (GB) calculations, enough? Catein Catherine (Tue Feb 13 2007 - 20:18:23 PST)
- Re: AMBER: Help: 1 ns for implicit solvent (GB) calculations, enough? Carlos Simmerling (Wed Feb 14 2007 - 04:26:31 PST)
- AMBER: atomicfluct Catein Catherine (Sun Feb 11 2007 - 21:45:40 PST)
- AMBER: simulating part of a molecule with homology modeling Dave, Sonya (Sat Feb 10 2007 - 16:00:11 PST)
- Re: AMBER: simulating part of a molecule with homology modeling Fenghui Fan (Sat Feb 10 2007 - 20:26:41 PST)
- RE: AMBER: simulating part of a molecule with homology modeling Dave, Sonya (Mon Feb 12 2007 - 08:50:36 PST)
- AMBER: How precise is a MD simulation? Dave, Sonya (Mon Feb 12 2007 - 16:00:07 PST)
- Re: AMBER: How precise is a MD simulation? Fenghui Fan (Mon Feb 12 2007 - 17:47:09 PST)
- Re: AMBER: How precise is a MD simulation? David Mobley (Tue Feb 13 2007 - 11:36:17 PST)
- RE: AMBER: How precise is a MD simulation? Yong Duan (Tue Feb 13 2007 - 11:45:48 PST)
- Re: AMBER: How precise is a MD simulation? David Mobley (Tue Feb 13 2007 - 12:11:17 PST)
- RE: AMBER: How precise is a MD simulation? Dave, Sonya (Tue Feb 13 2007 - 12:01:23 PST)
- Re: AMBER: How precise is a MD simulation? David Mobley (Tue Feb 13 2007 - 12:19:13 PST)
- AMBER: Best Force field for protein, DNA, and organic compounds? Catein Catherine (Tue Feb 13 2007 - 20:13:31 PST)
- Re: AMBER: Best Force field for protein, DNA, and organic compounds? Carlos Simmerling (Wed Feb 14 2007 - 04:28:05 PST)
- RE: AMBER: Best Force field for protein, DNA, and organic compounds? Rafi Ahmad (Wed Feb 14 2007 - 05:35:28 PST)
- Re: AMBER: Best Force field for protein, DNA, and organic compounds? Carlos Simmerling (Wed Feb 14 2007 - 06:08:17 PST)
- Re: AMBER: How precise is a MD simulation? Which strcutures should be reported? Catein Catherine (Tue Feb 13 2007 - 20:28:09 PST)
- Re: AMBER: How precise is a MD simulation? Which strcutures should be reported? Carlos Simmerling (Wed Feb 14 2007 - 04:25:02 PST)
- RE: AMBER: How precise is a MD simulation? Dave, Sonya (Wed Feb 14 2007 - 10:35:16 PST)
- RE: AMBER: simulating part of a molecule with homology modeling Dave, Sonya (Mon Feb 12 2007 - 08:50:36 PST)
- Re: AMBER: simulating part of a molecule with homology modeling Fenghui Fan (Sat Feb 10 2007 - 20:26:41 PST)
- AMBER: quasiharnomic analysis Hans Lee (Sun Feb 11 2007 - 13:12:52 PST)
- Re: AMBER: quasiharnomic analysis David A. Case (Mon Feb 12 2007 - 08:31:36 PST)
- Re: AMBER: extracting coordinate from crd file Bill Ross (Sun Feb 11 2007 - 21:13:38 PST)
- AMBER: connect atom deepti nayar (Mon Feb 12 2007 - 03:01:57 PST)
- Re: AMBER: connect atom David A. Case (Mon Feb 12 2007 - 08:28:57 PST)
- AMBER: help me out... Anju Sharma (Mon Feb 12 2007 - 04:21:00 PST)
- AMBER: Fwd: help me out... Anju Sharma (Mon Feb 12 2007 - 04:22:57 PST)
- Re: AMBER: Fwd: help me out... Chris Moth (Mon Feb 12 2007 - 07:08:24 PST)
- RE: AMBER: help me out... Ross Walker (Mon Feb 12 2007 - 07:11:03 PST)
- AMBER: Fwd: help me out... Anju Sharma (Mon Feb 12 2007 - 04:22:57 PST)
- AMBER: reporting EPtot and EKtot separately for two molecules Gabbar S. Daaku (Mon Feb 12 2007 - 08:15:09 PST)
- AMBER: Re: reporting EPtot and EKtot separately for two molecules Gabbar S. Daaku (Mon Feb 12 2007 - 08:16:45 PST)
- Re: AMBER: reporting EPtot and EKtot separately for two molecules David A. Case (Mon Feb 12 2007 - 08:25:55 PST)
- AMBER: Lone Pairs Beale, John (Mon Feb 12 2007 - 10:52:48 PST)
- Re: AMBER: Lone Pairs David A. Case (Mon Feb 12 2007 - 13:24:48 PST)
- RE: AMBER: Lone Pairs Beale, John (Tue Feb 13 2007 - 06:33:44 PST)
- Re: AMBER: Lone Pairs David A. Case (Tue Feb 13 2007 - 08:00:21 PST)
- RE: AMBER: Lone Pairs Beale, John (Tue Feb 13 2007 - 06:33:44 PST)
- Re: AMBER: Lone Pairs David A. Case (Mon Feb 12 2007 - 13:24:48 PST)
- AMBER: How to place torsion restraint Seth Lilavivat (Mon Feb 12 2007 - 17:24:40 PST)
- Re: AMBER: How to place torsion restraint Gustavo Seabra (Tue Feb 13 2007 - 08:48:08 PST)
- AMBER: Modified nucleotides mathew k varghese (Mon Feb 12 2007 - 20:44:31 PST)
- Re: AMBER: Modified nucleotides Ilyas Yildirim (Mon Feb 12 2007 - 20:58:50 PST)
- RE: AMBER: Modified nucleotides Seth Lilavivat (Mon Feb 12 2007 - 20:59:37 PST)
- Re: AMBER: Modified nucleotides Thomas Cheatham (Mon Feb 12 2007 - 21:03:38 PST)
- Re: AMBER: Modified nucleotides Sean Rathlef (Mon Feb 12 2007 - 21:55:20 PST)
- Re: AMBER: Modified nucleotides Raviprasad Aduri (Tue Feb 13 2007 - 09:23:15 PST)
- Re: AMBER: Modified nucleotides mathew k varghese (Tue Feb 13 2007 - 19:47:08 PST)
- Re: AMBER: Modified nucleotides Ilyas Yildirim (Tue Feb 13 2007 - 20:05:25 PST)
- Re: AMBER: Modified nucleotides FyD (Wed Feb 14 2007 - 04:30:50 PST)
- Re: AMBER: Modified nucleotides Raviprasad Aduri (Wed Feb 14 2007 - 16:58:39 PST)
- Re: AMBER: Modified nucleotides mathew k varghese (Wed Feb 14 2007 - 21:09:56 PST)
- Re: AMBER: Modified nucleotides mathew k varghese (Tue Feb 13 2007 - 19:47:08 PST)
- AMBER: hi Anju Sharma (Tue Feb 13 2007 - 02:08:01 PST)
- Re: AMBER: hi Steven Winfield (Tue Feb 13 2007 - 02:42:16 PST)
- AMBER: Solvate box Sophie Barbe (Tue Feb 13 2007 - 05:21:28 PST)
- RE: AMBER: Solvate box Ross Walker (Tue Feb 13 2007 - 08:26:51 PST)
- Re: AMBER: Solvate box M. L. Dodson (Tue Feb 13 2007 - 19:33:49 PST)
- Re: AMBER: hi Anju Sharma (Tue Feb 13 2007 - 20:44:45 PST)
- Re: AMBER: hi Ilyas Yildirim (Wed Feb 14 2007 - 14:14:11 PST)
- Re: AMBER: hi Steven Winfield (Wed Feb 14 2007 - 14:21:01 PST)
- AMBER: Solvate box Sophie Barbe (Tue Feb 13 2007 - 05:21:28 PST)
- RE: AMBER: hi Ross Walker (Tue Feb 13 2007 - 08:16:56 PST)
- Re: AMBER: hi Anju Sharma (Tue Feb 13 2007 - 20:48:36 PST)
- Re: AMBER: hi Anju Sharma (Tue Feb 13 2007 - 20:50:16 PST)
- RE: AMBER: hi Ross Walker (Wed Feb 14 2007 - 08:15:50 PST)
- Re: AMBER: hi Anju Sharma (Tue Feb 13 2007 - 20:48:36 PST)
- Re: AMBER: hi Steven Winfield (Tue Feb 13 2007 - 02:42:16 PST)
- AMBER: Constraint virial David Cerutti (Tue Feb 13 2007 - 02:22:20 PST)
- AMBER: Box problems in vacuum minimization with sander.serial 8 j j (Tue Feb 13 2007 - 11:05:16 PST)
- Re: AMBER: Box problems in vacuum minimization with sander.serial 8 David A. Case (Tue Feb 13 2007 - 11:34:57 PST)
- Re: AMBER: Box problems in vacuum minimization with sander.serial 8 j j (Tue Feb 13 2007 - 11:43:34 PST)
- Re: AMBER: Box problems in vacuum minimization with sander.serial 8 David A. Case (Tue Feb 13 2007 - 11:34:57 PST)
- AMBER: How to parameterize frcmod for NA Seth Lilavivat (Tue Feb 13 2007 - 11:27:59 PST)
- AMBER: Replica Exchange Christopher Gaughan (Tue Feb 13 2007 - 13:20:08 PST)
- AMBER: Positive binding free energy! Rima Chaudhuri (Tue Feb 13 2007 - 14:53:05 PST)
- Re: AMBER: Positive binding free energy! David Cerutti (Tue Feb 13 2007 - 16:40:35 PST)
- AMBER: SANDER bug Ichinkhorloo Erdenebaatar (Tue Feb 13 2007 - 17:19:21 PST)
- Re: AMBER: SANDER bug David A. Case (Wed Feb 14 2007 - 10:11:12 PST)
- AMBER: LeaP: Mol2 files A Box (Tue Feb 13 2007 - 17:44:08 PST)
- Re: AMBER: LeaP: Mol2 files FyD (Wed Feb 14 2007 - 09:47:40 PST)
- AMBER: Comparison of normal modes with ptraj? Harald Lanig (Wed Feb 14 2007 - 02:10:19 PST)
- Re: AMBER: Comparison of normal modes with ptraj? Gohlke.bioinformatik.uni-frankfurt.de (Wed Feb 14 2007 - 05:08:38 PST)
- AMBER: NMR violations increase in explicite water Michel Becker (Wed Feb 14 2007 - 12:15:14 PST)
- Re: AMBER: NMR violations increase in explicite water David A. Case (Thu Feb 15 2007 - 08:40:12 PST)
- AMBER: Deriving constraint forces on water molecules based on SETTLE moves David Cerutti (Wed Feb 14 2007 - 16:08:45 PST)
- Re: AMBER: Deriving constraint forces on water molecules based on SETTLE moves Steven Winfield (Thu Feb 15 2007 - 05:28:00 PST)
- AMBER: Prepgen A Box (Wed Feb 14 2007 - 20:15:21 PST)
- AMBER: units in hessian matrix Marie Brut (Thu Feb 15 2007 - 08:52:01 PST)
- Re: AMBER: units in hessian matrix David A. Case (Thu Feb 15 2007 - 09:31:01 PST)
- Re: AMBER: units in hessian matrix Adrian Roitberg (Thu Feb 15 2007 - 09:35:07 PST)
- Re: AMBER: units in hessian matrix David A. Case (Thu Feb 15 2007 - 10:07:03 PST)
- Re: AMBER: units in hessian matrix Adrian Roitberg (Thu Feb 15 2007 - 09:35:07 PST)
- Re: AMBER: units in hessian matrix David A. Case (Thu Feb 15 2007 - 09:31:01 PST)
- AMBER: Simulating a section of a molecule Dave, Sonya (Thu Feb 15 2007 - 08:59:53 PST)
- Re: AMBER: Simulating a section of a molecule Carlos Simmerling (Thu Feb 15 2007 - 10:06:50 PST)
- Re: AMBER: Simulating a section of a molecule Thomas Cheatham III (Thu Feb 15 2007 - 13:33:40 PST)
- RE: AMBER: Simulating a section of a molecule Dave, Sonya (Thu Feb 15 2007 - 15:10:06 PST)
- AMBER: implicit solvent free energy calcs David Mobley (Thu Feb 15 2007 - 10:07:37 PST)
- Re: AMBER: implicit solvent free energy calcs David A. Case (Thu Feb 15 2007 - 12:19:53 PST)
- AMBER: read the data Esther Brugger (Thu Feb 15 2007 - 11:53:45 PST)
- Re: AMBER: read the data Florian Haberl (Thu Feb 15 2007 - 12:11:16 PST)
- Re: AMBER: read the data Esther Brugger (Fri Feb 16 2007 - 09:43:39 PST)
- Re: AMBER: read the data David LeBard (Fri Feb 16 2007 - 10:31:13 PST)
- Re: AMBER: read the data Esther Brugger (Fri Feb 16 2007 - 11:01:27 PST)
- Re: AMBER: read the data David LeBard (Fri Feb 16 2007 - 11:22:12 PST)
- Re: AMBER: read the data Ilyas Yildirim (Fri Feb 16 2007 - 15:05:31 PST)
- Re: AMBER: question about ADDLES module Z. Nevin Gerek (Fri Feb 16 2007 - 17:33:58 PST)
- Re: AMBER: question about ADDLES module Carlos Simmerling (Fri Feb 16 2007 - 17:48:27 PST)
- Re: AMBER: read the data Esther Brugger (Sat Feb 17 2007 - 12:22:50 PST)
- Re: AMBER: read the data Esther Brugger (Fri Feb 16 2007 - 09:43:39 PST)
- Re: AMBER: read the data David LeBard (Thu Feb 15 2007 - 13:18:08 PST)
- Re: AMBER: read the data Esther Brugger (Thu Feb 15 2007 - 15:00:39 PST)
- Re: AMBER: read the data Esther Brugger (Fri Feb 16 2007 - 10:40:45 PST)
- Re: AMBER: read the data David LeBard (Fri Feb 16 2007 - 11:00:10 PST)
- Re: AMBER: read the data Esther Brugger (Fri Feb 16 2007 - 08:54:06 PST)
- Re: AMBER: read the data Florian Haberl (Thu Feb 15 2007 - 12:11:16 PST)
- AMBER: Density of a system in MD Akshay Patny (Thu Feb 15 2007 - 12:45:27 PST)
- AMBER: How to modify the velocity of a water molecule? Ji-Lai Li (Thu Feb 15 2007 - 18:15:45 PST)
- Re: AMBER: How to modify the velocity of a water molecule? Carlos Simmerling (Thu Feb 15 2007 - 18:58:54 PST)
- Re: AMBER: How to modify the velocity of a water molecule? Thomas Cheatham (Thu Feb 15 2007 - 19:47:24 PST)
- AMBER: Box dimensions Steve Seibold (Fri Feb 16 2007 - 07:13:45 PST)
- Re: AMBER: Box dimensions Gustavo Seabra (Fri Feb 16 2007 - 08:19:39 PST)
- RE: AMBER: Box dimensions Akshay Patny (Fri Feb 16 2007 - 08:34:40 PST)
- Re: AMBER: Box dimensions David A. Case (Fri Feb 16 2007 - 08:54:48 PST)
- RE: AMBER: Box dimensions Steve Seibold (Fri Feb 16 2007 - 09:12:41 PST)
- RE: AMBER: Box dimensions Akshay Patny (Fri Feb 16 2007 - 08:34:40 PST)
- Re: AMBER: Box dimensions Gustavo Seabra (Fri Feb 16 2007 - 08:19:39 PST)
- AMBER: H-bond ptraj dilemma Lorenzo Gontrani (Fri Feb 16 2007 - 07:46:54 PST)
- AMBER: Problem with dacdif when using cygwin Steven Winfield (Fri Feb 16 2007 - 10:33:38 PST)
- Re: AMBER: Problem with dacdif when using cygwin Scott Brozell (Fri Feb 16 2007 - 11:32:06 PST)
- Re: AMBER: Problem with dacdif when using cygwin David A. Case (Fri Feb 16 2007 - 11:44:00 PST)
- Re: AMBER: Problem with dacdif when using cygwin Steven Winfield (Fri Feb 16 2007 - 12:15:00 PST)
- Re: AMBER: Problem with dacdif when using cygwin Scott Brozell (Fri Feb 16 2007 - 12:43:07 PST)
- Re: AMBER: Problem with dacdif when using cygwin Steven Winfield (Fri Feb 16 2007 - 12:15:00 PST)
- AMBER: HELP: Are there anybody have used AMBER to simulate glucose chain? WANG,YING (Fri Feb 16 2007 - 12:57:40 PST)
- Re: AMBER: HELP: Are there anybody have used AMBER to simulate glucose chain? Franck Vendeix (Fri Feb 16 2007 - 14:04:48 PST)
- Re: AMBER: HELP: Are there anybody have used AMBER to simulate glucose chain? WANG,YING (Fri Feb 16 2007 - 21:55:53 PST)
- AMBER: Torsion Restraint on Glycosidic Bond Seth Lilavivat (Fri Feb 16 2007 - 13:13:52 PST)
- Re: AMBER: Torsion Restraint on Glycosidic Bond Thomas Cheatham III (Fri Feb 16 2007 - 13:32:30 PST)
- Re: AMBER: Torsion Restraint on Glycosidic Bond Carlos Simmerling (Fri Feb 16 2007 - 13:32:44 PST)
- AMBER: High Standard Deviation for nmode (TSVIB) mm_pbsa Rima Chaudhuri (Fri Feb 16 2007 - 14:17:49 PST)
- Re: AMBER: High Standard Deviation for nmode (TSVIB) mm_pbsa David A. Case (Fri Feb 16 2007 - 17:22:05 PST)
- Re: AMBER: High Standard Deviation for nmode (TSVIB) mm_pbsa Rima Chaudhuri (Sat Feb 17 2007 - 12:10:38 PST)
- Re: AMBER: High Standard Deviation for nmode (TSVIB) mm_pbsa David A. Case (Sat Feb 17 2007 - 13:22:38 PST)
- Re: AMBER: High Standard Deviation for nmode (TSVIB) mm_pbsa Rima Chaudhuri (Wed Feb 28 2007 - 14:25:54 PST)
- Re: AMBER: High Standard Deviation for nmode (TSVIB) mm_pbsa Rima Chaudhuri (Sat Feb 17 2007 - 12:10:38 PST)
- Re: AMBER: High Standard Deviation for nmode (TSVIB) mm_pbsa David A. Case (Fri Feb 16 2007 - 17:22:05 PST)
- AMBER: Installing AMBER v9 in Linux Syed Tarique Moin (Sat Feb 17 2007 - 08:12:28 PST)
- RE: AMBER: Installing AMBER v9 in Linux Ross Walker (Sat Feb 17 2007 - 08:52:00 PST)
- RE: AMBER: Installing AMBER v9 in Linux Syed Tarique Moin (Sun Feb 18 2007 - 21:51:55 PST)
- RE: AMBER: Installing AMBER v9 in Linux Ross Walker (Sun Feb 18 2007 - 22:53:45 PST)
- RE: AMBER: Installing AMBER v9 in Linux Syed Tarique Moin (Sun Feb 18 2007 - 23:26:33 PST)
- RE: AMBER: Installing AMBER v9 in Linux Ross Walker (Sun Feb 18 2007 - 23:39:05 PST)
- RE: AMBER: Installing AMBER v9 in Linux Syed Tarique Moin (Mon Feb 19 2007 - 00:25:13 PST)
- RE: AMBER: Installing AMBER v9 in Linux Ross Walker (Mon Feb 19 2007 - 01:44:15 PST)
- RE: AMBER: Installing AMBER v9 in Linux Syed Tarique Moin (Mon Feb 19 2007 - 02:13:35 PST)
- RE: AMBER: Installing AMBER v9 in Linux Ross Walker (Mon Feb 19 2007 - 10:03:12 PST)
- RE: AMBER: Installing AMBER v9 in Linux Peter Gannett (Mon Feb 19 2007 - 04:27:44 PST)
- RE: AMBER: Installing AMBER v9 in Linux Syed Tarique Moin (Sun Feb 18 2007 - 21:51:55 PST)
- RE: AMBER: Installing AMBER v9 in Linux Ross Walker (Sat Feb 17 2007 - 08:52:00 PST)
- AMBER: Installing AMBER v9 in Linux Syed Tarique Moin (Sat Feb 17 2007 - 08:15:31 PST)
- Re: AMBER: Installing AMBER v9 in Linux Ilyas Yildirim (Sat Feb 17 2007 - 23:30:34 PST)
- AMBER: REMD error on first exchange Daniel Oehme (Sun Feb 18 2007 - 18:31:57 PST)
- Re: AMBER: REMD error on first exchange Carlos Simmerling (Mon Feb 19 2007 - 06:21:16 PST)
- AMBER: Water density calculation mathew k varghese (Sun Feb 18 2007 - 22:51:57 PST)
- AMBER: Residence time of WATER gurpreet singh (Mon Feb 19 2007 - 00:33:59 PST)
- AMBER: MDGRAPE and AMBER Craig Gough (Mon Feb 19 2007 - 00:34:43 PST)
- Re: AMBER: MDGRAPE and AMBER Carlos Simmerling (Mon Feb 19 2007 - 06:23:58 PST)
- AMBER: crd to pdb conversion AYTUG TUNCEL (Mon Feb 19 2007 - 05:27:34 PST)
- Re: AMBER: crd to pdb conversion Ilyas Yildirim (Mon Feb 19 2007 - 05:35:16 PST)
- Re: Re: AMBER: crd to pdb conversion AYTUG TUNCEL (Mon Feb 19 2007 - 07:04:58 PST)
- Re: Re: AMBER: crd to pdb conversion Ilyas Yildirim (Mon Feb 19 2007 - 09:12:43 PST)
- Re: Re: AMBER: crd to pdb conversion AYTUG TUNCEL (Mon Feb 19 2007 - 07:04:58 PST)
- Re: AMBER: crd to pdb conversion Ilyas Yildirim (Mon Feb 19 2007 - 05:35:16 PST)
- AMBER: carbohydrate-peptide Beale, John (Mon Feb 19 2007 - 08:09:54 PST)
- Re: AMBER: carbohydrate-peptide David A. Case (Wed Feb 21 2007 - 16:04:59 PST)
- AMBER: DNA and RNA computations Jiri Sponer (Mon Feb 19 2007 - 10:16:53 PST)
- AMBER: problems with bonding disulfide linkages Beale, John (Mon Feb 19 2007 - 12:39:10 PST)
- Re: AMBER: problems with bonding disulfide linkages Carlos Simmerling (Mon Feb 19 2007 - 12:45:28 PST)
- Re: AMBER: problems with bonding disulfide linkages Pankaj R. Daga (Mon Feb 19 2007 - 14:54:24 PST)
- AMBER: Error in running replica exchange MD Seongeun Yang (Tue Feb 20 2007 - 03:45:38 PST)
- Re: AMBER: Error in running replica exchange MD Carlos Simmerling (Tue Feb 20 2007 - 06:17:56 PST)
- Re: AMBER: Error in running replica exchange MD Carlos Simmerling (Tue Feb 20 2007 - 06:26:24 PST)
- Re: AMBER: Error in running replica exchange MD Carlos Simmerling (Tue Feb 20 2007 - 06:17:56 PST)
- AMBER: Beale, John (Tue Feb 20 2007 - 05:02:24 PST)
- AMBER: oops Beale, John (Tue Feb 20 2007 - 05:35:19 PST)
- AMBER: RE: about ANTECHAMBER Ross Walker (Tue Feb 20 2007 - 08:22:21 PST)
- AMBER: interior dielectric constant Miguel Ferreira (Tue Feb 20 2007 - 09:22:31 PST)
- AMBER: AMBER ff in CHARMM format!! Swarup Gupta (Tue Feb 20 2007 - 19:26:38 PST)
- AMBER: Nanopore simulation subhasish chatterjee (Tue Feb 20 2007 - 20:02:56 PST)
- AMBER: Is this system too large? Hu, Shaowen \(JSC-SK\)[USRA] (Tue Feb 20 2007 - 20:17:41 PST)
- Re: AMBER: Is this system too large? Fenghui Fan (Tue Feb 20 2007 - 20:53:26 PST)
- RE: AMBER: Is this system too large? Hu, Shaowen \(JSC-SK\)[USRA] (Wed Feb 21 2007 - 09:02:21 PST)
- RE: AMBER: Is this system too large? Fenghui Fan (Wed Feb 21 2007 - 14:55:57 PST)
- RE: AMBER: Is this system too large? Hu, Shaowen \(JSC-SK\)[USRA] (Wed Feb 21 2007 - 09:02:21 PST)
- Re: AMBER: Is this system too large? David A. Case (Wed Feb 21 2007 - 16:05:39 PST)
- RE: AMBER: Is this system too large? Hu, Shaowen \(JSC-SK\)[USRA] (Thu Feb 22 2007 - 07:58:01 PST)
- Re: AMBER: Is this system too large? David A. Case (Thu Feb 22 2007 - 18:01:52 PST)
- RE: AMBER: Is this system too large? Hu, Shaowen \(JSC-SK\)[USRA] (Fri Feb 23 2007 - 08:10:09 PST)
- RE: AMBER: Is this system too large? Hu, Shaowen \(JSC-SK\)[USRA] (Thu Feb 22 2007 - 07:58:01 PST)
- Re: AMBER: Is this system too large? Fenghui Fan (Tue Feb 20 2007 - 20:53:26 PST)
- AMBER: LEaP Problem Beale, John (Wed Feb 21 2007 - 05:11:13 PST)
- Re: AMBER: LEaP Problem David A. Case (Thu Feb 22 2007 - 18:02:11 PST)
- AMBER: Amber/ANAL and psf files rebeca.mmb.pcb.ub.es (Wed Feb 21 2007 - 08:24:33 PST)
- AMBER: contacts in ptraj (Amber 9) rebeca.mmb.pcb.ub.es (Wed Feb 21 2007 - 10:56:50 PST)
- Re: AMBER: Amber/ANAL and psf files David A. Case (Wed Feb 21 2007 - 20:14:42 PST)
- AMBER: native contact analysis! r. a. (Wed Feb 21 2007 - 18:52:37 PST)
- AMBER: atom types deepti nayar (Wed Feb 21 2007 - 21:43:38 PST)
- AMBER: Errors in amber9 parallel installation Seongeun Yang (Thu Feb 22 2007 - 05:34:23 PST)
- RE: AMBER: Errors in amber9 parallel installation Ross Walker (Thu Feb 22 2007 - 05:52:16 PST)
- AMBER: applying restraints Seth Lilavivat (Thu Feb 22 2007 - 08:40:59 PST)
- AMBER: Sander slower on 16 processors than 8 Sontum, Steve (Thu Feb 22 2007 - 12:32:42 PST)
- Re: AMBER: Sander slower on 16 processors than 8 Martin Stennett (Thu Feb 22 2007 - 13:10:40 PST)
- Re: AMBER: Sander slower on 16 processors than 8 Carlos Simmerling (Thu Feb 22 2007 - 13:19:18 PST)
- Re: AMBER: Sander slower on 16 processors than 8 Adrian Roitberg (Thu Feb 22 2007 - 13:25:15 PST)
- Re: AMBER: Sander slower on 16 processors than 8 Martin Stennett (Thu Feb 22 2007 - 13:58:57 PST)
- RE: AMBER: Sander slower on 16 processors than 8 Yong Duan (Thu Feb 22 2007 - 14:10:45 PST)
- RE: AMBER: Sander slower on 16 processors than 8 Yong Duan (Thu Feb 22 2007 - 14:20:34 PST)
- RE: AMBER: Sander slower on 16 processors than 8 Ross Walker (Thu Feb 22 2007 - 14:10:57 PST)
- RE: AMBER: Sander slower on 16 processors than 8 Ross Walker (Thu Feb 22 2007 - 14:15:07 PST)
- RE: AMBER: Sander slower on 16 processors than 8 Yong Duan (Thu Feb 22 2007 - 14:25:13 PST)
- RE: AMBER: Sander slower on 16 processors than 8 Ross Walker (Thu Feb 22 2007 - 17:47:55 PST)
- RE: AMBER: Sander slower on 16 processors than 8 Yong Duan (Thu Feb 22 2007 - 14:25:13 PST)
- Re: AMBER: Sander slower on 16 processors than 8 Robert Duke (Thu Feb 22 2007 - 19:27:12 PST)
- Re: AMBER: Sander slower on 16 processors than 8 Martin Stennett (Thu Feb 22 2007 - 13:10:40 PST)
- AMBER: ptraj bug? -- doesn't like restart files from REMD Nicolas Lux Fawzi (Thu Feb 22 2007 - 13:33:58 PST)
- AMBER: Problems with QMMM tests on Altix Jarrod Smith (Thu Feb 22 2007 - 14:03:14 PST)
- Re: AMBER: Problems with QMMM tests on Altix Luis Gracia (Thu Feb 22 2007 - 14:35:14 PST)
- RE: AMBER: Problems with QMMM tests on Altix Ross Walker (Thu Feb 22 2007 - 18:12:55 PST)
- RE: AMBER: Problems with QMMM tests on Altix Jarrod Smith (Fri Feb 23 2007 - 11:34:53 PST)
- RE: AMBER: Problems with QMMM tests on Altix Ross Walker (Sat Feb 24 2007 - 10:02:24 PST)
- RE: AMBER: Problems with QMMM tests on Altix Jarrod Smith (Fri Feb 23 2007 - 11:34:53 PST)
- AMBER: units of mwcovar matrix befor conversion Chris Moth (Thu Feb 22 2007 - 15:01:57 PST)
- AMBER: [rsachdeva@imtech.res.in: Pls help - REMD with torsional restraints] David A. Case (Thu Feb 22 2007 - 18:03:47 PST)
- AMBER: Intel Fortran Compiler 9.1, MPICH, and AMBER 8 Craig Gough (Fri Feb 23 2007 - 00:47:36 PST)
- AMBER: AMBER question: Combining Gaff and ff99 forcefields for a single molecule Chris-Kriton Skylaris (Fri Feb 23 2007 - 01:54:00 PST)
- Re: AMBER: Intel Fortran Compiler 9.1, MPICH, and AMBER 8 Andreas Svrcek-Seiler (Fri Feb 23 2007 - 03:02:52 PST)
- Re: AMBER: Intel Fortran Compiler 9.1, MPICH, and AMBER 8 David A. Case (Fri Feb 23 2007 - 08:35:34 PST)
- AMBER: SCF convergence issues Steven Winfield (Fri Feb 23 2007 - 03:27:38 PST)
- RE: AMBER: SCF convergence issues Ross Walker (Fri Feb 23 2007 - 11:00:21 PST)
- Re: AMBER: SCF convergence issues Steven Winfield (Fri Feb 23 2007 - 11:13:33 PST)
- RE: AMBER: SCF convergence issues Ross Walker (Fri Feb 23 2007 - 15:35:47 PST)
- Re: AMBER: SCF convergence issues Steven Winfield (Fri Feb 23 2007 - 11:13:33 PST)
- RE: AMBER: SCF convergence issues Ross Walker (Fri Feb 23 2007 - 11:00:21 PST)
- AMBER: Error in running Replica Exchange MD with amber9 Seongeun Yang (Fri Feb 23 2007 - 06:15:48 PST)
- Re: AMBER: Error in running Replica Exchange MD with amber9 Carlos Simmerling (Fri Feb 23 2007 - 07:16:59 PST)
- Re: AMBER: Error in running Replica Exchange MD with amber9 Seongeun Yang (Sat Feb 24 2007 - 00:49:49 PST)
- Re: AMBER: Error in running Replica Exchange MD with amber9 Carlos Simmerling (Sat Feb 24 2007 - 12:27:01 PST)
- Re: AMBER: Error in running Replica Exchange MD with amber9 Seongeun Yang (Sat Feb 24 2007 - 00:49:49 PST)
- Re: AMBER: Error in running Replica Exchange MD with amber9 Carlos Simmerling (Fri Feb 23 2007 - 07:16:59 PST)
- AMBER: MD temperature and MM_pbsa temperature Rima Chaudhuri (Fri Feb 23 2007 - 13:22:30 PST)
- AMBER: RESP calculation of modified nucleotides mathew k varghese (Fri Feb 23 2007 - 22:50:23 PST)
- Re: AMBER: RESP calculation of modified nucleotides rpaduri.chem.wayne.edu (Sat Feb 24 2007 - 13:49:10 PST)
- Re: AMBER: RESP calculation of modified nucleotides FyD (Sun Feb 25 2007 - 09:49:55 PST)
- Re: AMBER: RESP calculation of modified nucleotides mathew k varghese (Sun Feb 25 2007 - 19:17:34 PST)
- Re: AMBER: RESP calculation of modified nucleotides Raviprasad Aduri (Mon Feb 26 2007 - 08:56:47 PST)
- Re: AMBER: RESP calculation of modified nucleotides mathew k varghese (Wed Feb 28 2007 - 00:55:58 PST)
- Re: AMBER: RESP calculation of modified nucleotides Raviprasad Aduri (Wed Feb 28 2007 - 13:11:34 PST)
- Re: AMBER: RESP calculation of modified nucleotides rpaduri.chem.wayne.edu (Sat Feb 24 2007 - 13:49:10 PST)
- AMBER: Best way to apply WC basepair restraints during MD Seth Lilavivat (Sun Feb 25 2007 - 12:24:40 PST)
- AMBER: problem with atom restraints Ed Pate (Sun Feb 25 2007 - 20:53:31 PST)
- Re: AMBER: problem with atom restraints David A. Case (Wed Feb 28 2007 - 10:54:58 PST)
- AMBER: getting same box dimension bertrand russell (Sun Feb 25 2007 - 21:27:40 PST)
- Re: AMBER: getting same box dimension David A. Case (Mon Feb 26 2007 - 18:10:30 PST)
- AMBER: phe-phe molecule deepti nayar (Sun Feb 25 2007 - 22:01:26 PST)
- Re: AMBER: phe-phe molecule bertrand russell (Sun Feb 25 2007 - 22:08:42 PST)
- Re: AMBER: phe-phe molecule deepti nayar (Sun Feb 25 2007 - 23:46:10 PST)
- Re: AMBER: phe-phe molecule bertrand russell (Mon Feb 26 2007 - 00:03:27 PST)
- Re: AMBER: phe-phe molecule deepti nayar (Mon Feb 26 2007 - 20:51:53 PST)
- Re: AMBER: phe-phe molecule David A. Case (Wed Feb 28 2007 - 10:03:49 PST)
- Re: AMBER: phe-phe molecule deepti nayar (Sun Feb 25 2007 - 23:46:10 PST)
- Re: AMBER: phe-phe molecule bertrand russell (Sun Feb 25 2007 - 22:08:42 PST)
- AMBER: Modified nucleotides-ATOM TYPES mathew k varghese (Mon Feb 26 2007 - 01:13:59 PST)
- Re: AMBER: Modified nucleotides-ATOM TYPES David A. Case (Mon Feb 26 2007 - 06:21:16 PST)
- AMBER: PTRAJ problem Beale, John (Mon Feb 26 2007 - 10:26:21 PST)
- AMBER: Re: REMD with torsional restraints- Temperature swapping not occuring David A. Case (Mon Feb 26 2007 - 15:01:41 PST)
- AMBER: IFVARI parameter Ed Pate (Tue Feb 27 2007 - 13:22:43 PST)
- Re: AMBER: IFVARI parameter Kristina Furse (Tue Feb 27 2007 - 13:50:45 PST)
- AMBER: abnormal high temperature during NPT ensembles MD ebright HMS (Tue Feb 27 2007 - 15:13:29 PST)
- Re: AMBER: abnormal high temperature during NPT ensembles MD Carlos Simmerling (Tue Feb 27 2007 - 18:36:01 PST)
- Re: AMBER: abnormal high temperature during NPT ensembles MD ebright HMS (Wed Feb 28 2007 - 08:29:41 PST)
- Re: AMBER: abnormal high temperature during NPT ensembles MD Carlos Simmerling (Tue Feb 27 2007 - 18:36:01 PST)
- AMBER: AM1-bcc Evan Kelly (Tue Feb 27 2007 - 16:26:22 PST)
- RE: AMBER: AM1-bcc Junmei Wang (Tue Feb 27 2007 - 18:57:23 PST)
- AMBER: Disulfide Bonds Beale, John (Wed Feb 28 2007 - 04:56:55 PST)
- Re: AMBER: Disulfide Bonds Jerome.GOLEBIOWSKI.unice.fr (Wed Feb 28 2007 - 05:27:23 PST)
- RE: AMBER: Disulfide Bonds Beale, John (Wed Feb 28 2007 - 05:37:48 PST)
- Re: AMBER: Disulfide Bonds Jerome.GOLEBIOWSKI.unice.fr (Wed Feb 28 2007 - 05:27:23 PST)
- AMBER: LEaP crashes Beale, John (Wed Feb 28 2007 - 08:29:16 PST)
- Re: AMBER: LEaP crashes David A. Case (Wed Feb 28 2007 - 10:03:29 PST)
- AMBER: solvent accessible surface area (SASA) Esther Brugger (Wed Feb 28 2007 - 10:38:55 PST)
- Re: AMBER: solvent accessible surface area (SASA) Carlos Simmerling (Wed Feb 28 2007 - 14:50:20 PST)
- Re: AMBER: solvent accessible surface area (SASA) Esther Brugger (Wed Feb 28 2007 - 15:54:51 PST)
- Re: AMBER: solvent accessible surface area (SASA) Carlos Simmerling (Wed Feb 28 2007 - 14:50:20 PST)
- AMBER: Difference in Equilibration & Production MD in Amber Akshay Patny (Wed Feb 28 2007 - 12:33:56 PST)
- Re: AMBER: Difference in Equilibration & Production MD in Amber Gustavo Seabra (Wed Feb 28 2007 - 12:54:13 PST)
- AMBER: momentum and periodic boundary condition Wei Chen (Wed Feb 28 2007 - 17:59:49 PST)
- Last message date: Sun Mar 04 2007 - 06:07:28 PST
- Archived on: Mon Jan 05 2009 - 06:10:40 PST
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