Dear Aytug,
.crd files store only the coordinate information. Without knowing what the
atoms are (which are stored in .prmtop file), there is not way you can
create a .pdb file.
On Mon, 19 Feb 2007, AYTUG TUNCEL wrote:
> Dear all,
>
> Is there anyway converting the crd file to pdb format directly without the prmtop file. Because I used the ALASCAN in mm_pbsa module in order to create mutated residues but it requires new prmtop files for binding energy calculation. How can I create the new prmtop files for the corresponding structures that bear the mutated residues?Thanks in advance.
>
> Aytug
>
> -----------------------------------------------------------------------
> The AMBER Mail Reflector
> To post, send mail to amber.scripps.edu
> To unsubscribe, send "unsubscribe amber" to majordomo.scripps.edu
>
>
--
Ilyas Yildirim
---------------------------------------------------------------
- Department of Chemisty - -
- University of Rochester - -
- Hutchison Hall, # B10 - -
- Rochester, NY 14627-0216 - Ph.:(585) 275 67 66 (Office) -
- http://www.pas.rochester.edu/~yildirim/ -
---------------------------------------------------------------
-----------------------------------------------------------------------
The AMBER Mail Reflector
To post, send mail to amber.scripps.edu
To unsubscribe, send "unsubscribe amber" to majordomo.scripps.edu
Received on Wed Feb 21 2007 - 06:07:26 PST
