Amber Archive Feb 2007 by messages with attachments

432 messages: Starting Sun Feb 04 2007 - 06:07:19 PST, Ending Sun Mar 04 2007 - 06:07:28 PST
This period: Most recent messages
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AMBER: format of .xyz files and pdb Gobind Singh Bisht (Wed Jan 31 2007 - 14:05:24 PST)
1. pink.pdb (103428 bytes)
2. yello5.xyz (99034 bytes)
AMBER: RESP Charges for Charged Carboxylate in Organic Ligand Akshay Patny (Fri Feb 02 2007 - 08:05:35 PST)
1. Telmisartan_charged_resp.prep (5987 bytes)
2. Telmisartan_charged_resp_ante.mol2 (6975 bytes)
3. Telmisartan_charged_resp_ante.jpg (93235 bytes)
Re: AMBER: iRED and corrired Holger Gohlke (Mon Feb 05 2007 - 08:09:15 PST)
1. bugfix.ptraj (11423 bytes)
Re: AMBER: Compiling Amber 8 on SuSE 10.2 Cenk Andac (Wed Feb 07 2007 - 12:02:17 PST)
1. bugfix.29 (1575 bytes)
AMBER: Membrane Simulation: NPT Issues Akshay Patny (Wed Feb 07 2007 - 09:28:05 PST)
1. pressure_1_20_120_ps.jpg (40127 bytes)
2. water_displaced.jpg (135939 bytes)
3. protein_moved.jpg (60227 bytes)
AMBER: Compiling Amber 7 David J. Powers (Thu Feb 08 2007 - 07:13:00 PST)
1. MACHINE (5094 bytes)
AMBER: Box problems in vacuum minimization with sander.serial 8 j j (Tue Feb 13 2007 - 11:05:16 PST)
1. RU5.min1 (209 bytes)
2. RU5.outm1 (2584 bytes)
3. NSER.min1 (150 bytes)
4. NSER.outm1 (2439 bytes)
5. NSER.16.outm1 (5549 bytes)
Re: AMBER: Modified nucleotides mathew k varghese (Tue Feb 13 2007 - 19:47:08 PST)
1. xae.pdb (3078 bytes)
2. xcs.pdb (3159 bytes)
3. xga.pdb (3159 bytes)
4. xty.pdb (3078 bytes)
AMBER: Prepgen A Box (Wed Feb 14 2007 - 20:15:21 PST)
1. 31G_SP.ac (13675 bytes)
2. 31G_SP.ac (13675 bytes)
3. mainchain.pro4 (175 bytes)
RE: AMBER: Installing AMBER v9 in Linux Syed Tarique Moin (Sun Feb 18 2007 - 23:26:33 PST)
1. serial.log (886 bytes)
RE: AMBER: Installing AMBER v9 in Linux Syed Tarique Moin (Mon Feb 19 2007 - 00:25:13 PST)
1. serial.log (528 bytes)
AMBER: Problems with QMMM tests on Altix Jarrod Smith (Thu Feb 22 2007 - 14:03:14 PST)
1. qmmm_errors.txt (6705 bytes)
AMBER: SCF convergence issues Steven Winfield (Fri Feb 23 2007 - 03:27:38 PST)
1. quantum_region.pdb (10279 bytes)
Re: AMBER: phe-phe molecule deepti nayar (Mon Feb 26 2007 - 20:51:53 PST)
1. phe_phe_charge_mol2.mol2 (5805 bytes)