hello Sir,
Amber is correctly installed on my machine to my best knowledge.
when i gave the command >ls $AMBERHOME/exe
outcome is :
ls: AMBERHOME?EXE/:no such file or directory
/usr/local/amber8:
QREADMEconfig.h doc exe KNOWN_PROBLEMS test benchmarks dat examples
INSTALL src
On 2/13/07, Ross Walker <ross.rosswalker.co.uk> wrote:
>
> Dear Anju,
>
> Has AMBER been correctly installed on your machine? What are the contents
> ofr $AMBERHOME/exe/ ?
>
> All the best
> Ross
>
> /\
> \/
> |\oss Walker
>
> | HPC Consultant and Staff Scientist |
> | San Diego Supercomputer Center |
> | Tel: +1 858 822 0854 | EMail:- ross.rosswalker.co.uk |
> | http://www.rosswalker.co.uk | PGP Key available on request |
>
> Note: Electronic Mail is not secure, has no guarantee of delivery, may not
> be read every day, and should not be used for urgent or sensitive issues.
>
>
> ------------------------------
> *From:* owner-amber.scripps.edu [mailto:owner-amber.scripps.edu] *On
> Behalf Of *Anju Sharma
> *Sent:* Tuesday, February 13, 2007 02:08
> *To:* amber.scripps.edu
> *Subject:* AMBER: hi
>
>
>
> hello
> Aftr installation of Amber8 i tried running the first tutorial bt got
> stuck in the first command only.
> I created nuc.in file which contain my DNA sequence.
> Next step is to create DNA structure using synatx:
>
> $AMBERHOME/exe/nucgen -O -i nuc.in -o nuc.out -d
> $AMBERHOME/dat/leap/parm/nucgen.dat -p nuc.pdb
>
> error m getting is /exe/nucgen is not valid file or directory... tried all
> the options to the best of my knowledge...but in vain.
> Please help me out how to continue...
>
> --
> Anju Sharma
>
>
--
Anju Sharma
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Received on Wed Feb 14 2007 - 06:07:48 PST
