Hi Anju,
>when i gave the command >ls $AMBERHOME/exe
>outcome is :
>ls: AMBERHOME?EXE/:no such file or directory
>/usr/local/amber8:
How did the lower case exe get converted to uppercase? Unfortunately this
sort of problem is an issue with your operating system and your
understanding of the operating system. Without a basic understanding how to
use the machine you are on and the operating system you are on there is
little I can do to help you out short of trading messages back and fourth
explaining in intricate detail how to do the simplest commands. I suggest
that you find someone who is an expert on the OS you are using and have them
explain things to you.
They can then check that environment variables like AMBERHOME are set
correctly and that the correct compilers exist and the software compiled
correctly.
All the best
Ross
/\
\/
|\oss Walker
| HPC Consultant and Staff Scientist |
| San Diego Supercomputer Center |
| Tel: +1 858 822 0854 | EMail:- ross.rosswalker.co.uk |
|
http://www.rosswalker.co.uk <
http://www.rosswalker.co.uk/> | PGP Key
available on request |
Note: Electronic Mail is not secure, has no guarantee of delivery, may not
be read every day, and should not be used for urgent or sensitive issues.
_____
From: owner-amber.scripps.edu [mailto:owner-amber.scripps.edu] On Behalf Of
Anju Sharma
Sent: Tuesday, February 13, 2007 20:49
To: amber.scripps.edu
Subject: Re: AMBER: hi
hello Sir,
Amber is correctly installed on my machine to my best knowledge.
when i gave the command >ls $AMBERHOME/exe
outcome is :
ls: AMBERHOME?EXE/:no such file or directory
/usr/local/amber8:
QREADMEconfig.h doc exe KNOWN_PROBLEMS test benchmarks dat examples
INSTALL src
On 2/13/07, Ross Walker <ross.rosswalker.co.uk> wrote:
Dear Anju,
Has AMBER been correctly installed on your machine? What are the contents
ofr $AMBERHOME/exe/ ?
All the best
Ross
/\
\/
|\oss Walker
| HPC Consultant and Staff Scientist |
| San Diego Supercomputer Center |
| Tel: +1 858 822 0854 | EMail:- ross.rosswalker.co.uk |
|
http://www.rosswalker.co.uk <
http://www.rosswalker.co.uk/> | PGP Key
available on request |
Note: Electronic Mail is not secure, has no guarantee of delivery, may not
be read every day, and should not be used for urgent or sensitive issues.
_____
From: owner-amber.scripps.edu [mailto: <mailto:owner-amber.scripps.edu>
owner-amber.scripps.edu] On Behalf Of Anju Sharma
Sent: Tuesday, February 13, 2007 02:08
To: amber.scripps.edu
Subject: AMBER: hi
hello
Aftr installation of Amber8 i tried running the first tutorial bt got stuck
in the first command only.
I created nuc.in <
http://nuc.in/> file which contain my DNA sequence.
Next step is to create DNA structure using synatx:
$AMBERHOME/exe/nucgen -O -i nuc.in <
http://nuc.in/> -o nuc.out -d
$AMBERHOME/dat/leap/parm/nucgen.dat -p nuc.pdb
error m getting is /exe/nucgen is not valid file or directory... tried all
the options to the best of my knowledge...but in vain.
Please help me out how to continue...
--
Anju Sharma
--
Anju Sharma
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Received on Sun Feb 18 2007 - 06:07:08 PST
