Re: AMBER: addions

From: David A. Case <>
Date: Sun, 4 Feb 2007 09:33:37 -0800

On Sat, Feb 03, 2007, Amit Kumar wrote:

> I want to run minimization and MD in implicit solvent. I wanted to know
> whether I should add counterions to neutralize the charge, or I shouldn`t
> bother with it, since I am using implicit solvent.

Amber's implicit solvent models assume that you will *not* have explicit

...good luck...dac

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Received on Wed Feb 07 2007 - 06:07:09 PST
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