Re: AMBER: side chain orientation

From: Fenghui Fan <>
Date: Tue, 6 Feb 2007 16:11:47 -0800 (PST)

As for a protein, it should has it PDB file. Then the
coodinates of the two side chains has been decided,
then you can know the orientation. I do not know
whether this is what you want. If not, please tell me
a little in detail on what you really want to get.

Best regards.

Fenghuin Fan

--- Esther Brugger <> wrote:

> Dear Amber Users,
> Does anyone know which program can be used to
> calculate the orientations of two amino acids which
> are in the different side of backbone of the
> molecule?
> Any advice are appreciated!
> Bests,
> Esther B.
> ---------------------------------
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Received on Wed Feb 07 2007 - 06:07:44 PST
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