AMBER: antechamber for topology file

From: deepti nayar <>
Date: Wed, 7 Feb 2007 16:12:51 +0530


i have to simulate a peptide containing a non standard residue. ito be
more precise, i have to simulate a dipeptide containing dehydroamino
acid residue. i have to simulate a peptide containing a
dehydrophenylalanine and dehydro del phenylalanine residue. so if i
load the standard force field ff99. how should i make a topology file
for ths non standard residue. i guess i have to use antechamber as
some of u told me. what all is required for making a topology file in

kindly help

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Received on Sun Feb 11 2007 - 06:07:04 PST
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