RE: AMBER: Installing AMBER v9 in Linux

From: Ross Walker <ross.rosswalker.co.uk>
Date: Mon, 19 Feb 2007 01:44:15 -0800

Try

chmod 755 g95

/\
\/
|\oss Walker

| HPC Consultant and Staff Scientist |
| San Diego Supercomputer Center |
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> -----Original Message-----
> From: owner-amber.scripps.edu
> [mailto:owner-amber.scripps.edu] On Behalf Of Syed Tarique Moin
> Sent: Monday, February 19, 2007 00:25
> To: amber.scripps.edu
> Subject: RE: AMBER: Installing AMBER v9 in Linux
>
> Hi,
> sorry again to disturb you.
>
> mcg09:/usr/local/amber9/src # export
> AMBERHOME=/usr/local/amber9
> mcg09:/usr/local/amber9/src # export
> AMBERHOME=/usr/local/amber9 export
> PATH=$PATH:$AMBERHOME/exe
> mcg09:/usr/local/amber9/src # ./configure -p4 g95
> AMBERHOME is set to /usr/local/amber9
> Setting up Amber configuration file for architecture:
> g95
> Using parallel communications library: none
> The MKL_HOME environment variable is not defined.
>
> The configuration file, config.h, was successfully
> created.
>
> mcg09:/usr/local/amber9/src # less config.h
>
> [2]+ Stopped less config.h
> mcg09:/usr/local/amber9/src # make serial >&
> serial.log
> mcg09:/usr/local/amber9/src # less serial.log
>
> Kindly consider it.
>
> --- Ross Walker <ross.rosswalker.co.uk> wrote:
>
> > Hi Syed,
> >
> > Here is your error:
> >
> > pgf90 -c -tp p7 -O1 -o new2oldparm.o
> > _new2oldparm.f
> > pgf90-linux86: LICENSE MANAGER PROBLEM: Cannot find
> > license file
> > The license files (or server network addresses)
> > attempted are
> > listed below. Use LM_LICENSE_FILE to use a
> > different license file,
> > or contact your software provider for a license
> > file.
> > Feature: pgf90-linux86
> > Filename: ./license.dat
> > License path: ./license.dat
> > FLEXlm error: -1,359. System Error: 2 "No such
> > file or directory"
> >
> > Your license file for the Portland group compiler is
> > not installed properly.
> > Hence it is refusing to compile anything. You should
> > either sort this out by
> > checking the pgf90 install instructions or try an
> > alternative compiler. G95
> > is reasonably good and is available for free. See
> > www.g95.org I would
> > suggest downloading binaries for your system here:
> > http://ftp.g95.org/ - you
> > likely want linux x86.
> >
> > All the best
> > Ross
> >
> > /\
> > \/
> > |\oss Walker
> >
> > | HPC Consultant and Staff Scientist |
> > | San Diego Supercomputer Center |
> > | Tel: +1 858 822 0854 | EMail:-
> > ross.rosswalker.co.uk |
> > | http://www.rosswalker.co.uk | PGP Key available on
> > request |
> >
> > Note: Electronic Mail is not secure, has no
> > guarantee of delivery, may not
> > be read every day, and should not be used for urgent
> > or sensitive issues.
> >
> >
> >
> --------------------------------------------------------------
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> > To post, send mail to amber.scripps.edu
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> >
>
> Syed Tarique Moin,
> Junior Research Fellow,
> H.E.J. Research Institute of Chemistry,
> International Center for Chemical and Biological Sciences,
> University of Karachi, Karachi-75720, Pakistan
>
> tarisyed.yahoo.com
> tarisyed.hotmail.com
>
>
>
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Received on Wed Feb 21 2007 - 06:07:24 PST
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