"Cluelessness" is the beginning, and often the end, of every great
adventure in molecular modeling.
Seriously, study and run some of the test scripts. Look at some of the
results.
Better yet, work the tutorials.
Read literature on simulations of systems similar to yours.
You have taken one step along a long road. Much will depend on the
types of insights you hope to gain from your simulation.
I suspect this questions is far too general for the members of the list
to consider closely.
Chris
Anju Sharma wrote:
>
> hello,
> i hd successfully installed/compiled Amber8 on Linux platform. nw what
> to do nxt??? Can anybdy help me in taking initial steps i.e. how to
> run amber to carry out operations described in it. i am clueless wht
> to next aftr compiling it.
> waiting for response.....
> --
> Anju Sharma
>
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Received on Wed Feb 14 2007 - 06:07:23 PST
