AMBER: Compiling AMBER 8 on RHEL4 AMD64

From: Seth Lilavivat <sethl.gatech.edu>
Date: Thu, 08 Feb 2007 14:53:44 -0500

Dear Amber Users,

I wasn't happy with my upgrade from SuSE 10.1 to 10.2 so I decided to go to
RHEL4. Everything compiles except for leap. What I have done so far is this:

./configure ifort

Then everything compiles fine except for leap. As suggested I then change the
config.h, the line CC=gcc to CC=gcc -m32. I then cd $AMBERHOME/src/leap doing a
make clean then a make install. Now I get the following errors:

usr/bin/ld: warning: i386 architecture of input file `basics.o' is incompatible
with i386:x86-64 output
/usr/bin/ld: warning: i386 architecture of input file `sysdepend.o' is
incompatible with i386:x86-64 output
/usr/bin/ld: warning: i386 architecture of input file `stringExtra.o' is
incompatible with i386:x86-64 output
/usr/bin/ld: warning: i386 architecture of input file `varArray.o' is
incompatible with i386:x86-64 output
/usr/bin/ld: warning: i386 architecture of input file `getline.o' is
incompatible with i386:x86-64 output
/usr/bin/ld: warning: i386 architecture of input file `avl.o' is incompatible
with i386:x86-64 output
/usr/bin/ld: warning: i386 architecture of input file `pdb_format.o' is
incompatible with i386:x86-64 output
/usr/bin/ld: warning: i386 architecture of input file `pdb_read.o' is
incompatible with i386:x86-64 output
/usr/bin/ld: warning: i386 architecture of input file `pdb_sprntf.o' is
incompatible with i386:x86-64 output
/usr/bin/ld: warning: i386 architecture of input file `pdb_sscanf.o' is
incompatible with i386:x86-64 output
/usr/bin/ld: warning: i386 architecture of input file `pdb_write.o' is
incompatible with i386:x86-64 output
/usr/bin/ld: warning: i386 architecture of input file `vector.o' is incompatible
with i386:x86-64 output
/usr/bin/ld: warning: i386 architecture of input file `zMatrix.o' is
incompatible with i386:x86-64 output
/usr/bin/ld: warning: i386 architecture of input file `sort.o' is incompatible
with i386:x86-64 output
/usr/bin/ld: warning: i386 architecture of input file `bag.o' is incompatible
with i386:x86-64 output
/usr/bin/ld: warning: i386 architecture of input file `hash.o' is incompatible
with i386:x86-64 output
/usr/bin/ld: warning: i386 architecture of input file `dictionary.o' is
incompatible with i386:x86-64 output
/usr/bin/ld: warning: i386 architecture of input file `database.o' is
incompatible with i386:x86-64 output
/usr/bin/ld: warning: i386 architecture of input file `nVector.o' is
incompatible with i386:x86-64 output
/usr/bin/ld: warning: i386 architecture of input file `ring.o' is incompatible
with i386:x86-64 output
/usr/bin/ld: warning: i386 architecture of input file `matrix.o' is incompatible
with i386:x86-64 output
/usr/bin/ld: warning: i386 architecture of input file `fortran.o' is
incompatible with i386:x86-64 output
/usr/bin/ld: warning: i386 architecture of input file `displayer.o' is
incompatible with i386:x86-64 output
/usr/bin/ld: warning: i386 architecture of input file `utilMakeHelp.o' is
incompatible with i386:x86-64 output
./utilMakeHelp helptext.text helptext.c
make[1]: *** [helptext.c] Segmentation fault
make[1]: Leaving directory `/usr/local/amber8/src/leap/src/leap'
make: *** [install] Error 2

Thanks everyone again for all of your help and cooperation.

Seth


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Received on Sun Feb 11 2007 - 06:07:24 PST
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