AMBER: Best way to apply WC basepair restraints during MD

From: Seth Lilavivat <>
Date: Sun, 25 Feb 2007 15:24:40 -0500

Dear Amber Community,

I would like to run an MD simulation on a NA molecule and hold the bases paired
and fixed with one another while allow the backbone to move. What would be the
best way to apply this? Would I follow a similar procedure as the NMR
refinement tutorial?

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Received on Wed Feb 28 2007 - 06:07:11 PST
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