Amber Archive Jun 2020: by subject

[AMBER] "Does not have a type" error in tleap
- Jatin Kashyap (Tue Jun 30 2020 - 12:48:43 PDT)
- Elvis Martis (Tue Jun 30 2020 - 00:10:12 PDT)
- Jatin Kashyap (Tue Jun 30 2020 - 00:00:30 PDT)
[AMBER] About two amber REMD simulation problems
- Alessandro Contini (Wed Jun 17 2020 - 00:54:33 PDT)
- 毛君 (Wed Jun 17 2020 - 00:26:42 PDT)
[AMBER] add NO3- ions
- 费俊文 (Mon Jun 29 2020 - 23:29:48 PDT)
[AMBER] adding a new covalently-linked ligand
- abhisek Mondal (Sat Jun 13 2020 - 03:39:57 PDT)
[AMBER] Adiabatic Mapping Info Request
- Bowleg, Jerrano (Tue Jun 16 2020 - 10:02:23 PDT)
[AMBER] AMBER Digest, Vol 3019, Issue 1
- David Cerutti (Mon Jun 01 2020 - 03:28:03 PDT)
- Gao J (Sun May 31 2020 - 19:05:05 PDT)
[AMBER] AMBER Digest, Vol 3020, Issue 1
- Manish Manish (Mon Jun 01 2020 - 18:27:55 PDT)
- Gao J (Mon Jun 01 2020 - 18:17:05 PDT)
[AMBER] Amber installation error
- David A Case (Wed Jun 24 2020 - 11:56:25 PDT)
- ankita mehta (Wed Jun 24 2020 - 06:41:57 PDT)
[AMBER] Amber parameters for sphingomyelin
- Sally Pias (Thu Jun 11 2020 - 11:37:03 PDT)
- Jianguo Li (Thu Jun 11 2020 - 01:27:52 PDT)
- Gould, Ian R (Thu Jun 11 2020 - 01:10:09 PDT)
- Jianguo Li (Thu Jun 11 2020 - 01:00:14 PDT)
[AMBER] amber20 output header
- Baker, Joseph (Thu Jun 11 2020 - 06:47:05 PDT)
[AMBER] Amber20 update failure on RHEL7/CentOS7
- Ross Walker (Wed Jun 24 2020 - 12:33:56 PDT)
- David A Case (Wed Jun 24 2020 - 12:05:53 PDT)
- Peng Wang (Wed Jun 24 2020 - 11:14:29 PDT)
[AMBER] ambertools19
- David A Case (Sat Jun 06 2020 - 06:07:35 PDT)
- Karl Kirschner (Fri Jun 05 2020 - 23:45:07 PDT)
- Renato Araujo (Fri Jun 05 2020 - 18:39:28 PDT)
[AMBER] An Error with MMPBSA.py in AmberTools 17
- Ibrahim Mohamed (Mon Jun 29 2020 - 15:23:34 PDT)
[AMBER] Apostrophe problems
- David A Case (Mon Jun 15 2020 - 11:47:13 PDT)
[AMBER] atom type in a substituted pyrimidine
- Sofia Vasilakaki (Wed Jun 10 2020 - 00:10:50 PDT)
[AMBER] Average structure of production run
- Nada Afiva (Tue Jun 16 2020 - 21:04:11 PDT)
- Elvis Martis (Tue Jun 16 2020 - 21:00:45 PDT)
- Nada Afiva (Tue Jun 16 2020 - 20:42:44 PDT)
- Elvis Martis (Tue Jun 16 2020 - 20:36:40 PDT)
- Nada Afiva (Tue Jun 16 2020 - 20:12:00 PDT)
- Liao (Tue Jun 16 2020 - 13:02:32 PDT)
- Sruthi Sudhakar (Tue Jun 16 2020 - 10:26:44 PDT)
[AMBER] bulding a monosaccharide with N-acetylation
- rosaester.forgione.unina.it (Thu Jun 25 2020 - 06:34:36 PDT)
[AMBER] Cellulose-lignin interaction
- Lachele Foley (Fri Jun 19 2020 - 21:06:50 PDT)
- Pinky Mazumder (Wed Jun 17 2020 - 17:06:39 PDT)
- David A Case (Thu Jun 11 2020 - 07:12:58 PDT)
- Pinky Mazumder (Wed Jun 10 2020 - 21:25:36 PDT)
[AMBER] centos 7 install Ambertools20 error, final link failed: Bad value
- David A Case (Tue Jun 30 2020 - 04:48:35 PDT)
- Gustaf Olsson (Mon Jun 29 2020 - 23:18:29 PDT)
- David A Case (Mon Jun 29 2020 - 11:15:15 PDT)
- He DC (Mon Jun 29 2020 - 07:50:32 PDT)
[AMBER] Charge parameters in GAFF
- Lorenzo Gontrani (Tue Jun 09 2020 - 05:18:36 PDT)
- David A Case (Tue Jun 09 2020 - 05:00:34 PDT)
- Stefan Menzel (Tue Jun 09 2020 - 01:14:04 PDT)
- Lorenzo Gontrani (Mon Jun 08 2020 - 23:35:12 PDT)
- Stefan Menzel (Mon Jun 08 2020 - 22:52:45 PDT)
[AMBER] CHARMM Forcefield in Amber - which barostat and ntp to use?
- Sally Pias (Fri Jun 05 2020 - 10:52:33 PDT)
- Sally Pias (Thu Jun 04 2020 - 20:16:59 PDT)
- Amanda Buyan (Thu Jun 04 2020 - 19:46:33 PDT)
- Sally Pias (Thu Jun 04 2020 - 14:08:08 PDT)
- Amanda Buyan (Wed Jun 03 2020 - 17:30:52 PDT)
- Amanda Buyan (Wed Jun 03 2020 - 17:15:01 PDT)
- Amanda Buyan (Wed Jun 03 2020 - 17:10:15 PDT)
- Matias Machado (Wed Jun 03 2020 - 07:51:32 PDT)
- Batuhan Kav (Wed Jun 03 2020 - 06:44:06 PDT)
- David A Case (Wed Jun 03 2020 - 06:17:56 PDT)
- David Cerutti (Wed Jun 03 2020 - 01:29:31 PDT)
- Amanda Buyan (Tue Jun 02 2020 - 20:54:59 PDT)
[AMBER] Cluster analysis: the result was strange
- Nada Afiva (Thu Jun 25 2020 - 14:52:23 PDT)
- Christina Bergonzo (Thu Jun 25 2020 - 06:22:23 PDT)
- Nada Afiva (Thu Jun 25 2020 - 01:27:41 PDT)
- Daniel Roe (Wed Jun 24 2020 - 05:15:45 PDT)
- Nada Afiva (Sat Jun 20 2020 - 01:57:48 PDT)
[AMBER] clustering parameter files
- Daniel Roe (Wed Jun 24 2020 - 05:42:40 PDT)
- Ranim Maaieh (Sun Jun 07 2020 - 16:43:21 PDT)
[AMBER] COM position
- mohamed marzouk (Tue Jun 02 2020 - 16:48:06 PDT)
- Daniel Roe (Mon Jun 01 2020 - 12:26:00 PDT)
[AMBER] Compiling Amber18 AmberTools19 on CentOS 7
- Gustaf Olsson (Thu Jun 25 2020 - 02:02:03 PDT)
[AMBER] contents of AMBER Digest, Vol 3040, Issue 1, message 1
- David A Case (Mon Jun 22 2020 - 06:51:46 PDT)
- gaohanlu (Sun Jun 21 2020 - 18:59:39 PDT)
[AMBER] Converting Amber trajectory NetCDF file to Desmond readable
- Nada Afiva (Sun Jun 07 2020 - 03:38:11 PDT)
[AMBER] CPPtraj PCA error
- Rana Rehan Khalid (Wed Jun 24 2020 - 09:16:09 PDT)
- Daniel Roe (Wed Jun 24 2020 - 09:13:47 PDT)
[AMBER] CPPTRAJ: Time Correlation Function (TCF)
- Daniel Roe (Mon Jun 29 2020 - 08:16:11 PDT)
- emanuele falbo (Mon Jun 29 2020 - 06:26:06 PDT)
[AMBER] Energy values from mdout files (excluding solvent molecules)
- Daniel Roe (Wed Jun 24 2020 - 09:04:15 PDT)
[AMBER] Epot value in Amber TI output
- Eric Chen (Fri Jun 12 2020 - 10:24:20 PDT)
[AMBER] Error in Antechamber
- David A Case (Sat Jun 27 2020 - 18:07:42 PDT)
- Shreeramesh (Sat Jun 27 2020 - 05:10:53 PDT)
- Scott Brozell (Fri Jun 26 2020 - 13:04:24 PDT)
- Shreeramesh (Fri Jun 26 2020 - 07:38:55 PDT)
[AMBER] Error in Installing Amber 20 on GPU
- David A Case (Tue Jun 30 2020 - 04:41:03 PDT)
- Suchetana Gupta (Mon Jun 29 2020 - 20:30:46 PDT)
- David A Case (Mon Jun 29 2020 - 11:04:42 PDT)
- Suchetana Gupta (Mon Jun 29 2020 - 05:55:25 PDT)
[AMBER] error installation mpi
- David A Case (Mon Jun 08 2020 - 08:56:02 PDT)
- Renato Araujo (Mon Jun 08 2020 - 08:29:28 PDT)
- David A Case (Mon Jun 08 2020 - 07:41:09 PDT)
- Renato Araujo (Mon Jun 08 2020 - 07:18:21 PDT)
[AMBER] error message create parameters
- David A Case (Mon Jun 29 2020 - 11:27:40 PDT)
- Renato Araujo (Mon Jun 29 2020 - 06:10:16 PDT)
- Elvis Martis (Mon Jun 29 2020 - 06:05:26 PDT)
- Renato Araujo (Mon Jun 29 2020 - 05:49:42 PDT)
[AMBER] Error Message while using GPU
- David A Case (Sun Jun 28 2020 - 12:19:51 PDT)
- Sivanandam Magudeeswaran (Sat Jun 27 2020 - 22:53:34 PDT)
[AMBER] Error while using Parmchk2
- David A Case (Wed Jun 17 2020 - 05:12:38 PDT)
- Sodiq Waheed (Tue Jun 16 2020 - 09:51:22 PDT)
[AMBER] Error with MMPBSA - per residue decomposition
- Prasanth G, Research Scholar (Fri Jun 19 2020 - 12:50:27 PDT)
- Prasanth G, Research Scholar (Thu Jun 18 2020 - 10:18:51 PDT)
- Prasanth G, Research Scholar (Sat Jun 13 2020 - 00:51:15 PDT)
[AMBER] Error: Could not determine format of topology
- Alessandro Contini (Wed Jun 17 2020 - 06:50:14 PDT)
- Jag Silwal (Wed Jun 17 2020 - 06:36:26 PDT)
[AMBER] error: installing amber18 on MacOS
- Gustaf Olsson (Sat Jun 20 2020 - 14:19:07 PDT)
- gaohanlu (Thu Jun 18 2020 - 07:29:58 PDT)
[AMBER] ERROR:nfft1 must be in the range of 6 to 512!
- David A Case (Thu Jun 25 2020 - 05:09:24 PDT)
- Rinsha Chk (Thu Jun 25 2020 - 02:28:26 PDT)
[AMBER] ff14SBonlysc + OPC3
- Fabian Glaser (Tue Jun 30 2020 - 01:09:29 PDT)
- David A Case (Mon Jun 29 2020 - 18:30:50 PDT)
- Daniel Roe (Mon Jun 29 2020 - 17:21:48 PDT)
- Matias Machado (Mon Jun 29 2020 - 11:33:29 PDT)
- Matias Machado (Mon Jun 29 2020 - 11:23:40 PDT)
- Daniel Roe (Mon Jun 29 2020 - 10:54:57 PDT)
- David A Case (Mon Jun 29 2020 - 10:54:28 PDT)
- Matias Machado (Mon Jun 29 2020 - 10:14:07 PDT)
- Matias Machado (Mon Jun 29 2020 - 10:03:05 PDT)
- Carlos Simmerling (Mon Jun 29 2020 - 08:52:20 PDT)
- Daniel Roe (Mon Jun 29 2020 - 08:25:38 PDT)
- Fabian Glaser (Mon Jun 29 2020 - 05:40:11 PDT)
[AMBER] Fwd: Error: Could not determine format of topology
- Daniel Roe (Wed Jun 24 2020 - 05:33:12 PDT)
- David A Case (Mon Jun 22 2020 - 18:27:32 PDT)
- Jag Silwal (Mon Jun 22 2020 - 11:37:13 PDT)
- Daniel Roe (Fri Jun 19 2020 - 19:05:11 PDT)
- Jag Silwal (Fri Jun 19 2020 - 14:55:42 PDT)
- Daniel Roe (Fri Jun 19 2020 - 14:29:58 PDT)
- David A Case (Fri Jun 19 2020 - 13:41:21 PDT)
- Jag Silwal (Fri Jun 19 2020 - 07:07:10 PDT)
- David A Case (Wed Jun 17 2020 - 12:12:16 PDT)
- Jag Silwal (Wed Jun 17 2020 - 06:37:19 PDT)
[AMBER] Fwd: generating parameters for methane
- angad sharma (Mon Jun 22 2020 - 08:54:13 PDT)
[AMBER] generating methane parameters
- David A Case (Fri Jun 26 2020 - 05:04:06 PDT)
- angad sharma (Fri Jun 26 2020 - 00:28:56 PDT)
- David Cerutti (Mon Jun 22 2020 - 09:17:04 PDT)
- angad sharma (Mon Jun 22 2020 - 08:56:55 PDT)
[AMBER] generating parameters for methane
- David A Case (Sat Jun 20 2020 - 04:39:48 PDT)
- angad sharma (Fri Jun 19 2020 - 22:10:36 PDT)
- Elvis Martis (Tue Jun 16 2020 - 03:04:16 PDT)
- angad sharma (Tue Jun 16 2020 - 02:37:55 PDT)
[AMBER] GLYCAM and scaling of electrostatic and nonbonded interactions
- David A Case (Thu Jun 11 2020 - 11:02:54 PDT)
- Jordi Bujons (Thu Jun 11 2020 - 09:17:29 PDT)
[AMBER] Gold in PARMCHK.dat Antechamber.
- David A Case (Mon Jun 08 2020 - 06:42:09 PDT)
- anirudh mantri (Mon Jun 08 2020 - 01:59:25 PDT)
[AMBER] GPU error in the heating step of PMEMD.CUDA
- Gerardo Zerbetto De Palma (Mon Jun 22 2020 - 04:44:38 PDT)
- Gerardo Zerbetto De Palma (Mon Jun 22 2020 - 04:39:30 PDT)
- rosaester.forgione.unina.it (Mon Jun 22 2020 - 04:22:22 PDT)
- rosaester.forgione.unina.it (Mon Jun 22 2020 - 04:05:51 PDT)
[AMBER] Help GPU support information
- Renato Araujo (Thu Jun 25 2020 - 13:45:10 PDT)
[AMBER] help with building an amino acid based surfactant molecule
- Garcia, Mauro (Fri Jun 12 2020 - 11:22:46 PDT)
- Garcia, Mauro (Fri Jun 12 2020 - 11:08:54 PDT)
- Billiot, Eugene (Thu Jun 04 2020 - 15:55:54 PDT)
- Carlos Simmerling (Thu Jun 04 2020 - 10:13:21 PDT)
- Billiot, Eugene (Thu Jun 04 2020 - 10:12:12 PDT)
- Carlos Simmerling (Thu Jun 04 2020 - 09:52:10 PDT)
- Carlos Simmerling (Thu Jun 04 2020 - 08:56:50 PDT)
- Billiot, Eugene (Thu Jun 04 2020 - 08:28:57 PDT)
- Carlos Simmerling (Thu Jun 04 2020 - 08:21:36 PDT)
- Carlos Simmerling (Thu Jun 04 2020 - 08:20:24 PDT)
- Billiot, Eugene (Thu Jun 04 2020 - 08:01:18 PDT)
[AMBER] Hoogsteen H-bond
- Daniel Roe (Wed Jun 24 2020 - 05:20:41 PDT)
- Jisha B (Fri Jun 19 2020 - 22:20:58 PDT)
[AMBER] how to combine several stripped trajectory netcdf files
- Nada Afiva (Wed Jun 17 2020 - 00:02:02 PDT)
- Liao (Tue Jun 16 2020 - 21:08:52 PDT)
- Nada Afiva (Tue Jun 16 2020 - 21:03:04 PDT)
- Elvis Martis (Tue Jun 16 2020 - 21:01:47 PDT)
- Nada Afiva (Tue Jun 16 2020 - 20:44:22 PDT)
- Elvis Martis (Tue Jun 16 2020 - 20:38:50 PDT)
- Nada Afiva (Tue Jun 16 2020 - 20:09:05 PDT)
[AMBER] How to get the eigenvalues from PCA
- Daniel Roe (Wed Jun 24 2020 - 08:58:00 PDT)
[AMBER] How to install Ambertools 20 using Cygwin and CMake on windows 7?
- Daniel Roe (Wed Jun 24 2020 - 05:24:21 PDT)
- Ibrahim Mohamed (Sat Jun 20 2020 - 14:32:32 PDT)
[AMBER] How to use Ambertools20 parmed.py?
- David A Case (Sun Jun 21 2020 - 07:57:26 PDT)
- Ibrahim Mohamed (Sun Jun 21 2020 - 00:53:49 PDT)
[AMBER] igb for non-aqueous solvent?
- Timothy Schutt (Mon Jun 01 2020 - 07:34:27 PDT)
- David A Case (Mon Jun 01 2020 - 07:00:00 PDT)
[AMBER] Incompatibility of coordinate file with topology after minimization
- Daniel Roe (Wed Jun 24 2020 - 05:26:02 PDT)
- Houcemeddine Othman (Sun Jun 21 2020 - 06:04:04 PDT)
- David A Case (Sat Jun 20 2020 - 18:22:06 PDT)
- Houcemeddine Othman (Sat Jun 20 2020 - 06:16:13 PDT)
[AMBER] Individual water lifetimes within a distance cutoff?
- Kenneth Huang (Tue Jun 09 2020 - 20:55:20 PDT)
- Daniel Roe (Tue Jun 09 2020 - 08:01:09 PDT)
- Markowska (Tue Jun 09 2020 - 05:49:16 PDT)
- Kenneth Huang (Mon Jun 08 2020 - 16:18:17 PDT)
[AMBER] interaction entropy calculation
- Hector A. Baldoni (Tue Jun 30 2020 - 12:41:22 PDT)
[AMBER] Is there a method that can calculate the angle between two planes?
- Wesley Michael Botello-Smith (Mon Jun 29 2020 - 13:11:36 PDT)
- Daniel Roe (Mon Jun 29 2020 - 08:31:40 PDT)
- David A Case (Sun Jun 28 2020 - 12:33:40 PDT)
- xmgign.126.com (Sun Jun 28 2020 - 02:59:25 PDT)
[AMBER] junmaozb.foxmail.com
- 毛君 (Tue Jun 16 2020 - 21:11:16 PDT)
[AMBER] Ligand movement w.r.t protein backbone
- Debarati DasGupta (Tue Jun 30 2020 - 05:07:11 PDT)
- Daniel Roe (Mon Jun 29 2020 - 17:35:07 PDT)
- Prasanth G, Research Scholar (Mon Jun 29 2020 - 10:36:38 PDT)
- Debarati DasGupta (Mon Jun 29 2020 - 09:24:30 PDT)
- Daniel Roe (Mon Jun 29 2020 - 09:07:27 PDT)
- Prasanth G, Research Scholar (Sat Jun 27 2020 - 02:29:21 PDT)
[AMBER] MC barostat
- Debarati DasGupta (Thu Jun 04 2020 - 07:25:10 PDT)
[AMBER] MCPB.py problem to make step 1 works
- Pengfei Li (Thu Jun 11 2020 - 08:30:37 PDT)
- Barak Alnami (Mon Jun 08 2020 - 04:19:56 PDT)
[AMBER] Minimization erro
- Renato Araujo (Wed Jun 24 2020 - 06:06:32 PDT)
- Debarati DasGupta (Wed Jun 24 2020 - 05:44:11 PDT)
- Renato Araujo (Tue Jun 23 2020 - 18:51:42 PDT)
- David A Case (Tue Jun 23 2020 - 18:02:05 PDT)
- Debarati DasGupta (Tue Jun 23 2020 - 15:50:09 PDT)
- Renato Araujo (Tue Jun 23 2020 - 12:05:59 PDT)
[AMBER] MM/PBSA and GBSA fails
- David A Case (Sun Jun 07 2020 - 17:35:29 PDT)
- Thakur, Abhishek (Sun Jun 07 2020 - 16:02:48 PDT)
[AMBER] mmgbsa question
- David A Case (Tue Jun 16 2020 - 05:02:35 PDT)
- MYRIAN TORRES RICO (Tue Jun 16 2020 - 02:16:37 PDT)
[AMBER] MMPBSA.py error
- Oanh Thuy Ngoc Tran (Wed Jun 17 2020 - 14:10:45 PDT)
- Tony Yang (Tue Jun 16 2020 - 04:52:10 PDT)
- Casalini Tommaso (Tue Jun 16 2020 - 04:28:38 PDT)
- Tony Yang (Tue Jun 16 2020 - 04:23:10 PDT)
- Casalini Tommaso (Tue Jun 16 2020 - 04:09:30 PDT)
- Tony Yang (Tue Jun 16 2020 - 03:48:25 PDT)
- Oanh Thuy Ngoc Tran (Mon Jun 15 2020 - 14:57:20 PDT)
[AMBER] nastruct command query
- Christina Bergonzo (Thu Jun 25 2020 - 12:29:01 PDT)
- Athena N (Thu Jun 25 2020 - 12:25:31 PDT)
[AMBER] nativecontacts
- Daniel Roe (Wed Jun 24 2020 - 08:52:56 PDT)
[AMBER] nmropt vs infe
- Gard Nelson (Wed Jun 24 2020 - 15:58:53 PDT)
- Wesley Michael Botello-Smith (Tue Jun 23 2020 - 14:11:51 PDT)
- Gard Nelson (Mon Jun 22 2020 - 14:56:17 PDT)
[AMBER] OPLS-AA/M force field
- Rosellen, Martin (Tue Jun 16 2020 - 03:35:36 PDT)
[AMBER] Parameters for Implicit Membrane in MMPBSA.py
- Ray Luo (Thu Jun 18 2020 - 12:30:54 PDT)
- Li,Haoxi (Wed Jun 17 2020 - 14:41:35 PDT)
- Ray Luo (Thu Jun 11 2020 - 07:27:48 PDT)
- Li,Haoxi (Wed Jun 10 2020 - 12:08:14 PDT)
[AMBER] Parameters for sphingomyelin
- Jianguo Li (Tue Jun 09 2020 - 02:11:55 PDT)
[AMBER] pH-REMD error
- Kolattukudy P. Santo (Sun Jun 21 2020 - 11:50:54 PDT)
- Cruzeiro,Vinicius Wilian D (Sun Jun 21 2020 - 11:17:13 PDT)
- Kolattukudy P. Santo (Sun Jun 21 2020 - 09:35:12 PDT)
[AMBER] planarity issue during md
- David A Case (Thu Jun 18 2020 - 05:11:16 PDT)
- Sofia Vasilakaki (Thu Jun 18 2020 - 02:58:09 PDT)
- David A Case (Mon Jun 15 2020 - 11:51:16 PDT)
- Sofia Vasilakaki (Mon Jun 15 2020 - 07:33:55 PDT)
- David A Case (Mon Jun 15 2020 - 05:12:12 PDT)
- Sofia Vasilakaki (Mon Jun 15 2020 - 00:23:42 PDT)
[AMBER] pmemd.cuda for heating and equilibration?
- Nada Afiva (Thu Jun 25 2020 - 00:06:27 PDT)
- Kenneth Huang (Wed Jun 24 2020 - 21:44:11 PDT)
- Nada Afiva (Wed Jun 24 2020 - 18:27:34 PDT)
[AMBER] pmemd.MPI and minization trajectories
- Seibold, Steve Allan (Mon Jun 29 2020 - 11:38:51 PDT)
- David A Case (Mon Jun 29 2020 - 11:18:38 PDT)
- Gerald Monard (Mon Jun 29 2020 - 09:53:53 PDT)
- Seibold, Steve Allan (Mon Jun 29 2020 - 09:22:48 PDT)
- Daniel Roe (Mon Jun 29 2020 - 08:11:05 PDT)
- Seibold, Steve Allan (Mon Jun 29 2020 - 08:09:07 PDT)
[AMBER] Positive MM-PBSA and negative MM-GBSA binding energies
- Nada Afiva (Sun Jun 28 2020 - 15:24:36 PDT)
- Ray Luo (Sun Jun 28 2020 - 09:30:41 PDT)
- Elvis Martis (Sun Jun 28 2020 - 05:11:54 PDT)
- Nada Afiva (Sun Jun 28 2020 - 05:04:44 PDT)
- Ray Luo (Sat Jun 27 2020 - 08:20:22 PDT)
- Nada Afiva (Fri Jun 26 2020 - 22:59:48 PDT)
- Ray Luo (Fri Jun 26 2020 - 08:19:35 PDT)
- Nada Afiva (Thu Jun 25 2020 - 18:10:52 PDT)
- Ray Luo (Thu Jun 25 2020 - 16:59:14 PDT)
- Nada Afiva (Thu Jun 25 2020 - 15:08:24 PDT)
[AMBER] Problem in calculating pairwise interaction with CPPTRAJ
- Daniel Roe (Wed Jun 24 2020 - 09:07:22 PDT)
[AMBER] Problems with Make install Amber 18
- David A Case (Fri Jun 26 2020 - 05:38:14 PDT)
- Joanna Michelle E. Chua (Fri Jun 26 2020 - 05:03:03 PDT)
- David A Case (Fri Jun 26 2020 - 04:57:38 PDT)
- Joanna Michelle E. Chua (Fri Jun 26 2020 - 04:20:31 PDT)
- Daniel Roe (Fri Jun 26 2020 - 03:11:32 PDT)
- Gustaf Olsson (Fri Jun 26 2020 - 00:58:03 PDT)
- Joanna Michelle E. Chua (Fri Jun 26 2020 - 00:25:15 PDT)
- Gustaf Olsson (Thu Jun 25 2020 - 23:03:48 PDT)
- Renato Araujo (Thu Jun 25 2020 - 19:02:03 PDT)
- Joanna Michelle E. Chua (Thu Jun 25 2020 - 16:38:06 PDT)
- Renato Araujo (Thu Jun 25 2020 - 10:32:54 PDT)
- Joanna Michelle E. Chua (Thu Jun 25 2020 - 09:08:20 PDT)
- Gustaf Olsson (Wed Jun 24 2020 - 23:15:12 PDT)
- Joanna Michelle E. Chua (Wed Jun 24 2020 - 20:26:44 PDT)
[AMBER] Problems with RMSF calculations
- kartik.lakshmi.gmail.com (Mon Jun 29 2020 - 18:22:56 PDT)
- Daniel Roe (Mon Jun 29 2020 - 17:58:44 PDT)
- kartik.lakshmi.gmail.com (Mon Jun 29 2020 - 13:46:47 PDT)
- Daniel Roe (Mon Jun 29 2020 - 09:02:27 PDT)
- Kenneth Huang (Sat Jun 27 2020 - 15:58:53 PDT)
- kartik.lakshmi.gmail.com (Sat Jun 27 2020 - 12:56:05 PDT)
- Kenneth Huang (Fri Jun 26 2020 - 14:50:04 PDT)
- kartik.lakshmi.gmail.com (Fri Jun 26 2020 - 11:48:47 PDT)
[AMBER] protein on gold surface
- Gustaf Olsson (Wed Jun 10 2020 - 22:59:27 PDT)
- Raik Grünberg (Wed Jun 10 2020 - 12:43:47 PDT)
- Casalini Tommaso (Mon Jun 08 2020 - 03:14:47 PDT)
- Raik Grünberg (Thu Jun 04 2020 - 11:26:15 PDT)
[AMBER] Python related problem running MMPBSA.py.MPI
- Casalini Tommaso (Wed Jun 10 2020 - 08:57:54 PDT)
- Casalini Tommaso (Wed Jun 10 2020 - 08:37:07 PDT)
- David A Case (Wed Jun 10 2020 - 08:31:25 PDT)
- Casalini Tommaso (Wed Jun 10 2020 - 07:36:18 PDT)
[AMBER] question
- 闫芳芳 (Mon Jun 15 2020 - 05:52:52 PDT)
- David A Case (Mon Jun 15 2020 - 05:09:18 PDT)
- Gustavo Seabra (Sun Jun 14 2020 - 16:32:59 PDT)
- James Kress (Sun Jun 14 2020 - 11:53:25 PDT)
- Elvis Martis (Sun Jun 14 2020 - 07:17:47 PDT)
- 闫芳芳 (Sun Jun 14 2020 - 07:08:52 PDT)
[AMBER] RAMD implementation in the new Amber 20 package
- Richter, Stefan (Mon Jun 22 2020 - 08:12:36 PDT)
[AMBER] Regarding Amber 20 License
- Suchetana Gupta (Tue Jun 23 2020 - 03:09:47 PDT)
[AMBER] residue renumbering in trajectory files
- Kenneth Huang (Mon Jun 08 2020 - 15:51:27 PDT)
- Ranim Maaieh (Mon Jun 08 2020 - 13:40:51 PDT)
[AMBER] restraining surfactant tails in micelles intact
- Billiot, Eugene (Sat Jun 27 2020 - 08:09:15 PDT)
- David A Case (Sat Jun 27 2020 - 04:53:01 PDT)
- Billiot, Eugene (Fri Jun 26 2020 - 12:55:41 PDT)
[AMBER] restraint 10 kcal/mol
- Debarati DasGupta (Thu Jun 25 2020 - 06:12:18 PDT)
- David A Case (Wed Jun 24 2020 - 18:36:37 PDT)
- Debarati DasGupta (Wed Jun 24 2020 - 14:54:20 PDT)
- Daniel Roe (Wed Jun 24 2020 - 13:42:12 PDT)
- Debarati DasGupta (Wed Jun 24 2020 - 11:35:38 PDT)
[AMBER] Setting custom parameters for CpHMD simulations
- Jade Shi (Wed Jun 10 2020 - 15:38:59 PDT)
[AMBER] Steered MD in AMBER using GPU
- Souvik Dey (Tue Jun 23 2020 - 19:30:02 PDT)
[AMBER] Steered MD with highly charged species
- Delwakkada Liyanage, Senal Dinuka (Tue Jun 09 2020 - 08:55:06 PDT)
[AMBER] steered MD with restraints on a selection
- Baker, Joseph (Mon Jun 08 2020 - 19:44:03 PDT)
[AMBER] Steered Molecular Dynamics Simulation
- Vishal Singh (Sun Jun 28 2020 - 11:55:13 PDT)
[AMBER] suggestion for generation of prmtop and inpcrd file at different pH
- Vikram Dalal (Wed Jun 03 2020 - 14:04:52 PDT)
[AMBER] tiMerge error with ff19SB
- HOCHEOL LIM (Wed Jun 10 2020 - 01:30:47 PDT)
[AMBER] tleap - extract ion molecules and save it as pdb
- Daniel Roe (Wed Jun 10 2020 - 05:53:27 PDT)
- David A Case (Wed Jun 10 2020 - 04:33:02 PDT)
- HOCHEOL LIM (Tue Jun 09 2020 - 16:14:02 PDT)
[AMBER] tleap PDB file in ORCA
- David A Case (Thu Jun 18 2020 - 05:04:33 PDT)
- Benedikt Flöser (Thu Jun 18 2020 - 05:02:59 PDT)
- Daniel Roe (Thu Jun 18 2020 - 04:55:15 PDT)
- David Cerutti (Thu Jun 18 2020 - 01:18:50 PDT)
- Benedikt Flöser (Thu Jun 18 2020 - 00:22:46 PDT)
[AMBER] tleap splitting the lipid
- Matias Machado (Mon Jun 08 2020 - 08:46:00 PDT)
- Matias Machado (Mon Jun 08 2020 - 06:12:34 PDT)
- David A Case (Mon Jun 08 2020 - 05:22:36 PDT)
- zhiyi wu (Mon Jun 08 2020 - 02:58:22 PDT)
[AMBER] Truncated NMODE calculation with MMPBSA.py.MPI
- Wan, Shunzhou (Tue Jun 23 2020 - 09:34:57 PDT)
[AMBER] Tutorials unavailable
- Rodrigo Galindo-Murillo (Sun Jun 21 2020 - 08:58:34 PDT)
- Ahmed Elrashedy (Sat Jun 20 2020 - 23:58:38 PDT)
- Sruthi Sudhakar (Sat Jun 20 2020 - 23:08:32 PDT)
- Preeti Pandey (Sat Jun 20 2020 - 11:46:16 PDT)
- Rodrigo Galindo-Murillo (Sat Jun 20 2020 - 08:55:26 PDT)
- Sruthi Sudhakar (Sat Jun 20 2020 - 08:33:32 PDT)
[AMBER] using PLUMED with pmemd.cuda?
- viktor drobot (Fri Jun 05 2020 - 02:34:35 PDT)
- Amanda Buyan (Thu Jun 04 2020 - 19:48:31 PDT)
[AMBER] What is happening in my Molecular Dynamics in the beginning of every 500 steps ?
- Carlos Simmerling (Fri Jun 26 2020 - 11:20:39 PDT)
- Erdem Yeler (Fri Jun 26 2020 - 10:50:47 PDT)
- Erdem Yeler (Fri Jun 12 2020 - 09:49:45 PDT)
- David A Case (Sun Jun 07 2020 - 17:31:25 PDT)
- Erdem Yeler (Sun Jun 07 2020 - 14:01:41 PDT)
- David A Case (Sat Jun 06 2020 - 18:07:27 PDT)
- Erdem Yeler (Sat Jun 06 2020 - 15:52:23 PDT)
- Busra Demir (Thu Jun 04 2020 - 14:19:34 PDT)
- David Cerutti (Thu Jun 04 2020 - 09:07:19 PDT)
- Carlos Simmerling (Thu Jun 04 2020 - 08:57:57 PDT)
- Erdem Yeler (Thu Jun 04 2020 - 08:34:26 PDT)
[AMBER] Xleap - disappearance of selection when trying to relax selection
- Scott Brozell (Wed Jun 10 2020 - 23:32:57 PDT)
- David A Case (Wed Jun 10 2020 - 08:29:07 PDT)
- Billiot, Eugene (Wed Jun 10 2020 - 06:59:29 PDT)
- David A Case (Tue Jun 09 2020 - 13:37:30 PDT)
- Billiot, Eugene (Tue Jun 09 2020 - 11:18:43 PDT)
[AMBER] Zwitter ionic form of a residue
- Dr. Anselm Horn (Tue Jun 30 2020 - 06:22:20 PDT)
- Sunita Patel (Tue Jun 30 2020 - 04:20:44 PDT)
restraint 10 kcal/mol
- Debarati DasGupta (Fri Jun 26 2020 - 05:49:49 PDT)

Amber Archive Jun 2020 by subject