[AMBER] adding a new covalently-linked ligand

From: abhisek Mondal <abhisek.mndl.gmail.com>
Date: Sat, 13 Jun 2020 16:09:57 +0530


I'm pretty much new to adding new residue protocol.

I'm trying to simulate a DNA(with a covalent modification) using amber99sb
forcefield in GROMACS.
I have a new ligand (phosphorylated PEG) which is covalently attached with
2 Guanine bases of the DNA.
Could you please suggest to me how can I add this covalently attached
ligand to the forcefield database ?

Thank you. Regards.
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Received on Sat Jun 13 2020 - 04:00:03 PDT
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