Amber Archive Jun 2020 by messages with attachments
352 messages
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Starting
Sun May 31 2020 - 19:30:03 PDT,
Ending
Tue Jun 30 2020 - 13:30:03 PDT
This period
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[AMBER] What is happening in my Molecular Dynamics in the beginning of every 500 steps ?
Erdem Yeler
(Thu Jun 04 2020 - 08:34:26 PDT)
image.png
(70688 bytes)
[AMBER] MCPB.py problem to make step 1 works
Barak Alnami
(Mon Jun 08 2020 - 04:19:56 PDT)
MD.pdb
(10647 bytes)
MD2.pdb
(5502 bytes)
GD.mol2
(271 bytes)
GD.pdb
(480 bytes)
MD.in
(122 bytes)
MD.pdb
(7372 bytes)
UNL.frcmod
(501 bytes)
UNL.mol2
(7244 bytes)
UNL.pdb
(10166 bytes)
[AMBER] Steered MD with highly charged species
Delwakkada Liyanage, Senal Dinuka
(Tue Jun 09 2020 - 08:55:06 PDT)
PMF.10_100.25tps.jpg
(152642 bytes)
[AMBER] Epot value in Amber TI output
Eric Chen
(Fri Jun 12 2020 - 10:24:20 PDT)
ti.PNG
(15086 bytes)
energy.PNG
(23373 bytes)
Re: [AMBER] help with building an amino acid based surfactant molecule
Garcia, Mauro
(Fri Jun 12 2020 - 11:08:54 PDT)
image001.png
(54551 bytes)
ULV.png
(308902 bytes)
Scenario_1.docx
(179321 bytes)
Scenario_2.docx
(179186 bytes)
[AMBER] Error while using Parmchk2
Sodiq Waheed
(Tue Jun 16 2020 - 09:51:22 PDT)
SLN.mol2
(2402 bytes)
SLN.frcmod
(2572 bytes)
[AMBER] Fwd: Error: Could not determine format of topology
Jag Silwal
(Wed Jun 17 2020 - 06:37:19 PDT)
crd.txt
(45743 bytes)
top.txt
(569566 bytes)
Re: [AMBER] planarity issue during md
Sofia Vasilakaki
(Thu Jun 18 2020 - 02:58:09 PDT)
min1.png
(149322 bytes)
Re: [AMBER] Fwd: Error: Could not determine format of topology
Jag Silwal
(Fri Jun 19 2020 - 07:07:10 PDT)
act2.crd
(45743 bytes)
act2.top
(569566 bytes)
Re: [AMBER] Fwd: Error: Could not determine format of topology
Daniel Roe
(Fri Jun 19 2020 - 19:05:11 PDT)
top.witheol.txt
(569568 bytes)
Re: [AMBER] Fwd: Error: Could not determine format of topology
Jag Silwal
(Mon Jun 22 2020 - 11:37:13 PDT)
act2.crd
(569560 bytes)
Re: [AMBER] Fwd: Error: Could not determine format of topology
Daniel Roe
(Wed Jun 24 2020 - 05:33:12 PDT)
crd.witheol.crd.txt
(45745 bytes)
[AMBER] Amber installation error
ankita mehta
(Wed Jun 24 2020 - 06:41:57 PDT)
Screenshot_1.jpg
(364053 bytes)
[AMBER] restraint 10 kcal/mol
Debarati DasGupta
(Wed Jun 24 2020 - 11:35:38 PDT)
69325509881B4669B6C8002DBD64F67B.png
(42851 bytes)
[AMBER] Error in Antechamber
Shreeramesh
(Fri Jun 26 2020 - 07:38:55 PDT)
lig1.mol2
(3876 bytes)
[AMBER] Problems with RMSF calculations
kartik.lakshmi.gmail.com
(Fri Jun 26 2020 - 11:48:47 PDT)
comp_mean.png
(414672 bytes)
Re: [AMBER] Positive MM-PBSA and negative MM-GBSA binding energies
Nada Afiva
(Fri Jun 26 2020 - 22:59:48 PDT)
inp1-a.dat
(10622 bytes)
Re: [AMBER] Error in Antechamber
Shreeramesh
(Sat Jun 27 2020 - 05:10:53 PDT)
sqm.out
(5692 bytes)
Re: [AMBER] Problems with RMSF calculations
kartik.lakshmi.gmail.com
(Sat Jun 27 2020 - 12:56:05 PDT)
RMSF.PNG
(100159 bytes)
Re: [AMBER] Positive MM-PBSA and negative MM-GBSA binding energies
Nada Afiva
(Sun Jun 28 2020 - 05:04:44 PDT)
alltime-a.dat
(10627 bytes)
Re: [AMBER] Positive MM-PBSA and negative MM-GBSA binding energies
Nada Afiva
(Sun Jun 28 2020 - 15:24:36 PDT)
alltime.dat
(10627 bytes)
[AMBER] Error in Installing Amber 20 on GPU
Suchetana Gupta
(Mon Jun 29 2020 - 05:55:25 PDT)
SerialCudaTestErrorLog.log
(62894 bytes)
GPU-Error1.docx
(39955 bytes)
Re: [AMBER] Problems with RMSF calculations
kartik.lakshmi.gmail.com
(Mon Jun 29 2020 - 13:46:47 PDT)
rmsf_fomula.PNG
(54224 bytes)
Last message date
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Tue Jun 30 2020 - 13:30:03 PDT
Archived on
: Fri Nov 01 2024 - 05:55:55 PDT
352 messages
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