Amber Archive Jun 2020: by date

Sunday, 31 May 2020
- Re: [AMBER] AMBER Digest, Vol 3019, Issue 1 Gao J
Monday, 1 June 2020
- Re: [AMBER] AMBER Digest, Vol 3019, Issue 1 David Cerutti
- Re: [AMBER] igb for non-aqueous solvent? David A Case
- Re: [AMBER] igb for non-aqueous solvent? Timothy Schutt
- Re: [AMBER] COM position Daniel Roe
- Re: [AMBER] AMBER Digest, Vol 3020, Issue 1 Gao J
- Re: [AMBER] AMBER Digest, Vol 3020, Issue 1 Manish Manish
Tuesday, 2 June 2020
- Re: [AMBER] COM position mohamed marzouk
- [AMBER] CHARMM Forcefield in Amber - which barostat and ntp to use? Amanda Buyan
Wednesday, 3 June 2020
- Re: [AMBER] CHARMM Forcefield in Amber - which barostat and ntp to use? David Cerutti
- Re: [AMBER] CHARMM Forcefield in Amber - which barostat and ntp to use? David A Case
- Re: [AMBER] CHARMM Forcefield in Amber - which barostat and ntp to use? Batuhan Kav
- Re: [AMBER] CHARMM Forcefield in Amber - which barostat and ntp to use? Matias Machado
- [AMBER] suggestion for generation of prmtop and inpcrd file at different pH Vikram Dalal
- Re: [AMBER] CHARMM Forcefield in Amber - which barostat and ntp to use? Amanda Buyan
- Re: [AMBER] CHARMM Forcefield in Amber - which barostat and ntp to use? Amanda Buyan
- Re: [AMBER] CHARMM Forcefield in Amber - which barostat and ntp to use? Amanda Buyan
Thursday, 4 June 2020
- [AMBER] MC barostat Debarati DasGupta
- [AMBER] help with building an amino acid based surfactant molecule Billiot, Eugene
- Re: [AMBER] help with building an amino acid based surfactant molecule Carlos Simmerling
- Re: [AMBER] help with building an amino acid based surfactant molecule Carlos Simmerling
- Re: [AMBER] help with building an amino acid based surfactant molecule Billiot, Eugene
- [AMBER] What is happening in my Molecular Dynamics in the beginning of every 500 steps ? Erdem Yeler
- Re: [AMBER] help with building an amino acid based surfactant molecule Carlos Simmerling
- Re: [AMBER] What is happening in my Molecular Dynamics in the beginning of every 500 steps ? Carlos Simmerling
- Re: [AMBER] What is happening in my Molecular Dynamics in the beginning of every 500 steps ? David Cerutti
- Re: [AMBER] help with building an amino acid based surfactant molecule Carlos Simmerling
- Re: [AMBER] help with building an amino acid based surfactant molecule Billiot, Eugene
- Re: [AMBER] help with building an amino acid based surfactant molecule Carlos Simmerling
- [AMBER] protein on gold surface Raik Grünberg
- Re: [AMBER] CHARMM Forcefield in Amber - which barostat and ntp to use? Sally Pias
- Re: [AMBER] What is happening in my Molecular Dynamics in the beginning of every 500 steps ? Busra Demir
- Re: [AMBER] help with building an amino acid based surfactant molecule Billiot, Eugene
- Re: [AMBER] CHARMM Forcefield in Amber - which barostat and ntp to use? Amanda Buyan
- [AMBER] using PLUMED with pmemd.cuda? Amanda Buyan
- Re: [AMBER] CHARMM Forcefield in Amber - which barostat and ntp to use? Sally Pias
Friday, 5 June 2020
- Re: [AMBER] using PLUMED with pmemd.cuda? viktor drobot
- Re: [AMBER] CHARMM Forcefield in Amber - which barostat and ntp to use? Sally Pias
- [AMBER] ambertools19 Renato Araujo
- Re: [AMBER] ambertools19 Karl Kirschner
Saturday, 6 June 2020
- Re: [AMBER] ambertools19 David A Case
- Re: [AMBER] What is happening in my Molecular Dynamics in the beginning of every 500 steps ? Erdem Yeler
- Re: [AMBER] What is happening in my Molecular Dynamics in the beginning of every 500 steps ? David A Case
Sunday, 7 June 2020
- [AMBER] Converting Amber trajectory NetCDF file to Desmond readable Nada Afiva
- Re: [AMBER] What is happening in my Molecular Dynamics in the beginning of every 500 steps ? Erdem Yeler
- [AMBER] MM/PBSA and GBSA fails Thakur, Abhishek
- Re: [AMBER] clustering parameter files Ranim Maaieh
- Re: [AMBER] What is happening in my Molecular Dynamics in the beginning of every 500 steps ? David A Case
- Re: [AMBER] MM/PBSA and GBSA fails David A Case
Monday, 8 June 2020
- [AMBER] Gold in PARMCHK.dat Antechamber. anirudh mantri
- [AMBER] tleap splitting the lipid zhiyi wu
- Re: [AMBER] protein on gold surface Casalini Tommaso
- [AMBER] MCPB.py problem to make step 1 works Barak Alnami
- Re: [AMBER] tleap splitting the lipid David A Case
- Re: [AMBER] tleap splitting the lipid Matias Machado
- Re: [AMBER] Gold in PARMCHK.dat Antechamber. David A Case
- [AMBER] error installation mpi Renato Araujo
- Re: [AMBER] error installation mpi David A Case
- Re: [AMBER] error installation mpi Renato Araujo
- Re: [AMBER] tleap splitting the lipid Matias Machado
- Re: [AMBER] error installation mpi David A Case
- [AMBER] residue renumbering in trajectory files Ranim Maaieh
- Re: [AMBER] residue renumbering in trajectory files Kenneth Huang
- [AMBER] Individual water lifetimes within a distance cutoff? Kenneth Huang
- [AMBER] steered MD with restraints on a selection Baker, Joseph
- [AMBER] Charge parameters in GAFF Stefan Menzel
- Re: [AMBER] Charge parameters in GAFF Lorenzo Gontrani
Tuesday, 9 June 2020
- Re: [AMBER] Charge parameters in GAFF Stefan Menzel
- [AMBER] Parameters for sphingomyelin Jianguo Li
- Re: [AMBER] Charge parameters in GAFF David A Case
- Re: [AMBER] Charge parameters in GAFF Lorenzo Gontrani
- Re: [AMBER] Individual water lifetimes within a distance cutoff? Markowska
- Re: [AMBER] Individual water lifetimes within a distance cutoff? Daniel Roe
- [AMBER] Steered MD with highly charged species Delwakkada Liyanage, Senal Dinuka
- [AMBER] Xleap - disappearance of selection when trying to relax selection Billiot, Eugene
- Re: [AMBER] Xleap - disappearance of selection when trying to relax selection David A Case
- [AMBER] tleap - extract ion molecules and save it as pdb HOCHEOL LIM
- Re: [AMBER] Individual water lifetimes within a distance cutoff? Kenneth Huang
Wednesday, 10 June 2020
- [AMBER] atom type in a substituted pyrimidine Sofia Vasilakaki
- [AMBER] tiMerge error with ff19SB HOCHEOL LIM
- Re: [AMBER] tleap - extract ion molecules and save it as pdb David A Case
- Re: [AMBER] tleap - extract ion molecules and save it as pdb Daniel Roe
- Re: [AMBER] Xleap - disappearance of selection when trying to relax selection Billiot, Eugene
- [AMBER] Python related problem running MMPBSA.py.MPI Casalini Tommaso
- Re: [AMBER] Xleap - disappearance of selection when trying to relax selection David A Case
- Re: [AMBER] Python related problem running MMPBSA.py.MPI David A Case
- Re: [AMBER] Python related problem running MMPBSA.py.MPI Casalini Tommaso
- Re: [AMBER] Python related problem running MMPBSA.py.MPI Casalini Tommaso
- [AMBER] Parameters for Implicit Membrane in MMPBSA.py Li,Haoxi
- Re: [AMBER] protein on gold surface Raik Grünberg
- [AMBER] Setting custom parameters for CpHMD simulations Jade Shi
- [AMBER] Cellulose-lignin interaction Pinky Mazumder
- Re: [AMBER] protein on gold surface Gustaf Olsson
- Re: [AMBER] Xleap - disappearance of selection when trying to relax selection Scott Brozell
Thursday, 11 June 2020
- [AMBER] Amber parameters for sphingomyelin Jianguo Li
- Re: [AMBER] Amber parameters for sphingomyelin Gould, Ian R
- Re: [AMBER] Amber parameters for sphingomyelin Jianguo Li
- Re: [AMBER] amber20 output header Baker, Joseph
- Re: [AMBER] Cellulose-lignin interaction David A Case
- Re: [AMBER] Parameters for Implicit Membrane in MMPBSA.py Ray Luo
- Re: [AMBER] MCPB.py problem to make step 1 works Pengfei Li
- [AMBER] GLYCAM and scaling of electrostatic and nonbonded interactions Jordi Bujons
- Re: [AMBER] GLYCAM and scaling of electrostatic and nonbonded interactions David A Case
- Re: [AMBER] Amber parameters for sphingomyelin Sally Pias
Friday, 12 June 2020
- Re: [AMBER] What is happening in my Molecular Dynamics in the beginning of every 500 steps ? Erdem Yeler
- [AMBER] Epot value in Amber TI output Eric Chen
- Re: [AMBER] help with building an amino acid based surfactant molecule Garcia, Mauro
- Re: [AMBER] help with building an amino acid based surfactant molecule Garcia, Mauro
Saturday, 13 June 2020
- [AMBER] Error with MMPBSA - per residue decomposition Prasanth G, Research Scholar
- [AMBER] adding a new covalently-linked ligand abhisek Mondal
Sunday, 14 June 2020
- [AMBER] question 闫芳芳
- Re: [AMBER] question Elvis Martis
- Re: [AMBER] question James Kress
- Re: [AMBER] question Gustavo Seabra
Monday, 15 June 2020
- [AMBER] planarity issue during md Sofia Vasilakaki
- Re: [AMBER] question David A Case
- Re: [AMBER] planarity issue during md David A Case
- Re: [AMBER] question 闫芳芳
- Re: [AMBER] planarity issue during md Sofia Vasilakaki
- [AMBER] Apostrophe problems David A Case
- Re: [AMBER] planarity issue during md David A Case
- [AMBER] MMPBSA.py error Oanh Thuy Ngoc Tran
Tuesday, 16 June 2020
- [AMBER] mmgbsa question MYRIAN TORRES RICO
- [AMBER] generating parameters for methane angad sharma
- Re: [AMBER] generating parameters for methane Elvis Martis
- [AMBER] OPLS-AA/M force field Rosellen, Martin
- Re: [AMBER] MMPBSA.py error Tony Yang
- Re: [AMBER] MMPBSA.py error Casalini Tommaso
- Re: [AMBER] MMPBSA.py error Tony Yang
- Re: [AMBER] MMPBSA.py error Casalini Tommaso
- Re: [AMBER] MMPBSA.py error Tony Yang
- Re: [AMBER] mmgbsa question David A Case
- [AMBER] Error while using Parmchk2 Sodiq Waheed
- [AMBER] Adiabatic Mapping Info Request Bowleg, Jerrano
- [AMBER] Average structure of production run Sruthi Sudhakar
- Re: [AMBER] Average structure of production run Liao
- [AMBER] how to combine several stripped trajectory netcdf files Nada Afiva
- Re: [AMBER] Average structure of production run Nada Afiva
- Re: [AMBER] Average structure of production run Elvis Martis
- Re: [AMBER] how to combine several stripped trajectory netcdf files Elvis Martis
- Re: [AMBER] Average structure of production run Nada Afiva
- Re: [AMBER] how to combine several stripped trajectory netcdf files Nada Afiva
- Re: [AMBER] Average structure of production run Elvis Martis
- Re: [AMBER] how to combine several stripped trajectory netcdf files Elvis Martis
- Re: [AMBER] how to combine several stripped trajectory netcdf files Nada Afiva
- Re: [AMBER] Average structure of production run Nada Afiva
- Re: [AMBER] how to combine several stripped trajectory netcdf files Liao
- [AMBER] junmaozb.foxmail.com 毛君
Wednesday, 17 June 2020
- Re: [AMBER] how to combine several stripped trajectory netcdf files Nada Afiva
- [AMBER] About two amber REMD simulation problems 毛君
- Re: [AMBER] About two amber REMD simulation problems Alessandro Contini
- Re: [AMBER] Error while using Parmchk2 David A Case
- [AMBER] Error: Could not determine format of topology Jag Silwal
- [AMBER] Fwd: Error: Could not determine format of topology Jag Silwal
- Re: [AMBER] Error: Could not determine format of topology Alessandro Contini
- Re: [AMBER] Fwd: Error: Could not determine format of topology David A Case
- Re: [AMBER] MMPBSA.py error Oanh Thuy Ngoc Tran
- Re: [AMBER] Parameters for Implicit Membrane in MMPBSA.py Li,Haoxi
- Re: [AMBER] Cellulose-lignin interaction Pinky Mazumder
Thursday, 18 June 2020
- [AMBER] tleap PDB file in ORCA Benedikt Flöser
- Re: [AMBER] tleap PDB file in ORCA David Cerutti
- Re: [AMBER] planarity issue during md Sofia Vasilakaki
- Re: [AMBER] tleap PDB file in ORCA Daniel Roe
- Re: [AMBER] tleap PDB file in ORCA Benedikt Flöser
- Re: [AMBER] tleap PDB file in ORCA David A Case
- Re: [AMBER] planarity issue during md David A Case
- [AMBER] error: installing amber18 on MacOS gaohanlu
- Re: [AMBER] Error with MMPBSA - per residue decomposition Prasanth G, Research Scholar
- Re: [AMBER] Parameters for Implicit Membrane in MMPBSA.py Ray Luo
Friday, 19 June 2020
- Re: [AMBER] Fwd: Error: Could not determine format of topology Jag Silwal
- Re: [AMBER] Error with MMPBSA - per residue decomposition Prasanth G, Research Scholar
- Re: [AMBER] Fwd: Error: Could not determine format of topology David A Case
- Re: [AMBER] Fwd: Error: Could not determine format of topology Daniel Roe
- Re: [AMBER] Fwd: Error: Could not determine format of topology Jag Silwal
- Re: [AMBER] Fwd: Error: Could not determine format of topology Daniel Roe
- Re: [AMBER] Cellulose-lignin interaction Lachele Foley
- Re: [AMBER] generating parameters for methane angad sharma
- [AMBER] Hoogsteen H-bond Jisha B
Saturday, 20 June 2020
- [AMBER] Cluster analysis: the result was strange Nada Afiva
- Re: [AMBER] generating parameters for methane David A Case
- [AMBER] Incompatibility of coordinate file with topology after minimization Houcemeddine Othman
- [AMBER] Tutorials unavailable Sruthi Sudhakar
- Re: [AMBER] Tutorials unavailable Rodrigo Galindo-Murillo
- Re: [AMBER] Tutorials unavailable Preeti Pandey
- Re: [AMBER] error: installing amber18 on MacOS Gustaf Olsson
- [AMBER] How to install Ambertools 20 using Cygwin and CMake on windows 7? Ibrahim Mohamed
- Re: [AMBER] Incompatibility of coordinate file with topology after minimization David A Case
- Re: [AMBER] Tutorials unavailable Sruthi Sudhakar
- Re: [AMBER] Tutorials unavailable Ahmed Elrashedy
Sunday, 21 June 2020
- [AMBER] How to use Ambertools20 parmed.py? Ibrahim Mohamed
- Re: [AMBER] Incompatibility of coordinate file with topology after minimization Houcemeddine Othman
- Re: [AMBER] How to use Ambertools20 parmed.py? David A Case
- Re: [AMBER] Tutorials unavailable Rodrigo Galindo-Murillo
- [AMBER] pH-REMD error Kolattukudy P. Santo
- Re: [AMBER] pH-REMD error Cruzeiro,Vinicius Wilian D
- Re: [AMBER] pH-REMD error Kolattukudy P. Santo
- Re: [AMBER] contents of AMBER Digest, Vol 3040, Issue 1, message 1 gaohanlu
Monday, 22 June 2020
- [AMBER] GPU error in the heating step of PMEMD.CUDA rosaester.forgione.unina.it
- Re: [AMBER] GPU error in the heating step of PMEMD.CUDA rosaester.forgione.unina.it
- Re: [AMBER] GPU error in the heating step of PMEMD.CUDA Gerardo Zerbetto De Palma
- Re: [AMBER] GPU error in the heating step of PMEMD.CUDA Gerardo Zerbetto De Palma
- Re: [AMBER] contents of AMBER Digest, Vol 3040, Issue 1, message 1 David A Case
- [AMBER] RAMD implementation in the new Amber 20 package Richter, Stefan
- [AMBER] Fwd: generating parameters for methane angad sharma
- [AMBER] generating methane parameters angad sharma
- Re: [AMBER] generating methane parameters David Cerutti
- Re: [AMBER] Fwd: Error: Could not determine format of topology Jag Silwal
- [AMBER] nmropt vs infe Gard Nelson
- Re: [AMBER] Fwd: Error: Could not determine format of topology David A Case
Tuesday, 23 June 2020
- [AMBER] Regarding Amber 20 License Suchetana Gupta
- [AMBER] Truncated NMODE calculation with MMPBSA.py.MPI Wan, Shunzhou
- [AMBER] Minimization erro Renato Araujo
- Re: [AMBER] nmropt vs infe Wesley Michael Botello-Smith
- Re: [AMBER] Minimization erro Debarati DasGupta
- Re: [AMBER] Minimization erro David A Case
- Re: [AMBER] Minimization erro Renato Araujo
- [AMBER] Steered MD in AMBER using GPU Souvik Dey
Wednesday, 24 June 2020
- Re: [AMBER] Cluster analysis: the result was strange Daniel Roe
- Re: [AMBER] Hoogsteen H-bond Daniel Roe
- Re: [AMBER] How to install Ambertools 20 using Cygwin and CMake on windows 7? Daniel Roe
- Re: [AMBER] Incompatibility of coordinate file with topology after minimization Daniel Roe
- Re: [AMBER] Fwd: Error: Could not determine format of topology Daniel Roe
- Re: [AMBER] clustering parameter files Daniel Roe
- Re: [AMBER] Minimization erro Debarati DasGupta
- Re: [AMBER] Minimization erro Renato Araujo
- [AMBER] Amber installation error ankita mehta
- Re: [AMBER] nativecontacts Daniel Roe
- Re: [AMBER] How to get the eigenvalues from PCA Daniel Roe
- Re: [AMBER] Energy values from mdout files (excluding solvent molecules) Daniel Roe
- Re: [AMBER] Problem in calculating pairwise interaction with CPPTRAJ Daniel Roe
- Re: [AMBER] CPPtraj PCA error Daniel Roe
- Re: [AMBER] CPPtraj PCA error Rana Rehan Khalid
- [AMBER] Amber20 update failure on RHEL7/CentOS7 Peng Wang
- [AMBER] restraint 10 kcal/mol Debarati DasGupta
- Re: [AMBER] Amber installation error David A Case
- Re: [AMBER] Amber20 update failure on RHEL7/CentOS7 David A Case
- Re: [AMBER] Amber20 update failure on RHEL7/CentOS7 Ross Walker
- Re: [AMBER] restraint 10 kcal/mol Daniel Roe
- Re: [AMBER] restraint 10 kcal/mol Debarati DasGupta
- Re: [AMBER] nmropt vs infe Gard Nelson
- [AMBER] pmemd.cuda for heating and equilibration? Nada Afiva
- Re: [AMBER] restraint 10 kcal/mol David A Case
- [AMBER] Problems with Make install Amber 18 Joanna Michelle E. Chua
- Re: [AMBER] pmemd.cuda for heating and equilibration? Kenneth Huang
- Re: [AMBER] Problems with Make install Amber 18 Gustaf Olsson
Thursday, 25 June 2020
- Re: [AMBER] pmemd.cuda for heating and equilibration? Nada Afiva
- Re: [AMBER] Cluster analysis: the result was strange Nada Afiva
- [AMBER] Compiling Amber18 AmberTools19 on CentOS 7 Gustaf Olsson
- [AMBER] ERROR:nfft1 must be in the range of 6 to 512! Rinsha Chk
- Re: [AMBER] ERROR:nfft1 must be in the range of 6 to 512! David A Case
- Re: [AMBER] restraint 10 kcal/mol Debarati DasGupta
- Re: [AMBER] Cluster analysis: the result was strange Christina Bergonzo
- [AMBER] bulding a monosaccharide with N-acetylation rosaester.forgione.unina.it
- Re: [AMBER] Problems with Make install Amber 18 Joanna Michelle E. Chua
- Re: [AMBER] Problems with Make install Amber 18 Renato Araujo
- [AMBER] nastruct command query Athena N
- Re: [AMBER] nastruct command query Christina Bergonzo
- [AMBER] Help GPU support information Renato Araujo
- Re: [AMBER] Cluster analysis: the result was strange Nada Afiva
- [AMBER] Positive MM-PBSA and negative MM-GBSA binding energies Nada Afiva
- Re: [AMBER] Problems with Make install Amber 18 Joanna Michelle E. Chua
- Re: [AMBER] Positive MM-PBSA and negative MM-GBSA binding energies Ray Luo
- Re: [AMBER] Positive MM-PBSA and negative MM-GBSA binding energies Nada Afiva
- Re: [AMBER] Problems with Make install Amber 18 Renato Araujo
- Re: [AMBER] Problems with Make install Amber 18 Gustaf Olsson
Friday, 26 June 2020
- Re: [AMBER] Problems with Make install Amber 18 Joanna Michelle E. Chua
- [AMBER] generating methane parameters angad sharma
- Re: [AMBER] Problems with Make install Amber 18 Gustaf Olsson
- Re: [AMBER] Problems with Make install Amber 18 Daniel Roe
- Re: [AMBER] Problems with Make install Amber 18 Joanna Michelle E. Chua
- Re: [AMBER] Problems with Make install Amber 18 David A Case
- Re: [AMBER] Problems with Make install Amber 18 Joanna Michelle E. Chua
- Re: [AMBER] generating methane parameters David A Case
- Re: [AMBER] Problems with Make install Amber 18 David A Case
- [AMBER] FW: restraint 10 kcal/mol Debarati DasGupta
- [AMBER] Error in Antechamber Shreeramesh
- Re: [AMBER] Positive MM-PBSA and negative MM-GBSA binding energies Ray Luo
- Re: [AMBER] What is happening in my Molecular Dynamics in the beginning of every 500 steps ? Erdem Yeler
- Re: [AMBER] What is happening in my Molecular Dynamics in the beginning of every 500 steps ? Carlos Simmerling
- [AMBER] Problems with RMSF calculations kartik.lakshmi.gmail.com
- [AMBER] restraining surfactant tails in micelles intact Billiot, Eugene
- Re: [AMBER] Error in Antechamber Scott Brozell
- Re: [AMBER] Problems with RMSF calculations Kenneth Huang
- Re: [AMBER] Positive MM-PBSA and negative MM-GBSA binding energies Nada Afiva
Saturday, 27 June 2020
- [AMBER] Ligand movement w.r.t protein backbone Prasanth G, Research Scholar
- Re: [AMBER] restraining surfactant tails in micelles intact David A Case
- Re: [AMBER] Error in Antechamber Shreeramesh
- Re: [AMBER] restraining surfactant tails in micelles intact Billiot, Eugene
- Re: [AMBER] Positive MM-PBSA and negative MM-GBSA binding energies Ray Luo
- Re: [AMBER] Problems with RMSF calculations kartik.lakshmi.gmail.com
- Re: [AMBER] Problems with RMSF calculations Kenneth Huang
- Re: [AMBER] Error in Antechamber David A Case
- [AMBER] Error Message while using GPU Sivanandam Magudeeswaran
Sunday, 28 June 2020
- [AMBER] Is there a method that can calculate the angle between two planes? xmgign.126.com
- Re: [AMBER] Positive MM-PBSA and negative MM-GBSA binding energies Nada Afiva
- Re: [AMBER] Positive MM-PBSA and negative MM-GBSA binding energies Elvis Martis
- Re: [AMBER] Positive MM-PBSA and negative MM-GBSA binding energies Ray Luo
- [AMBER] Steered Molecular Dynamics Simulation Vishal Singh
- Re: [AMBER] Error Message while using GPU David A Case
- Re: [AMBER] Is there a method that can calculate the angle between two planes? David A Case
- Re: [AMBER] Positive MM-PBSA and negative MM-GBSA binding energies Nada Afiva
Monday, 29 June 2020
- [AMBER] ff14SBonlysc + OPC3 Fabian Glaser
- [AMBER] error message create parameters Renato Araujo
- [AMBER] Error in Installing Amber 20 on GPU Suchetana Gupta
- Re: [AMBER] error message create parameters Elvis Martis
- Re: [AMBER] error message create parameters Renato Araujo
- [AMBER] CPPTRAJ: Time Correlation Function (TCF) emanuele falbo
- [AMBER] centos 7 install Ambertools20 error, final link failed: Bad value He DC
- [AMBER] pmemd.MPI and minization trajectories Seibold, Steve Allan
- Re: [AMBER] pmemd.MPI and minization trajectories Daniel Roe
- Re: [AMBER] CPPTRAJ: Time Correlation Function (TCF) Daniel Roe
- Re: [AMBER] ff14SBonlysc + OPC3 Daniel Roe
- Re: [AMBER] Is there a method that can calculate the angle between two planes? Daniel Roe
- Re: [AMBER] ff14SBonlysc + OPC3 Carlos Simmerling
- Re: [AMBER] Problems with RMSF calculations Daniel Roe
- Re: [AMBER] Ligand movement w.r.t protein backbone Daniel Roe
- Re: [AMBER] pmemd.MPI and minization trajectories Seibold, Steve Allan
- Re: [AMBER] Ligand movement w.r.t protein backbone Debarati DasGupta
- Re: [AMBER] pmemd.MPI and minization trajectories Gerald Monard
- Re: [AMBER] ff14SBonlysc + OPC3 Matias Machado
- Re: [AMBER] ff14SBonlysc + OPC3 Matias Machado
- Re: [AMBER] Ligand movement w.r.t protein backbone Prasanth G, Research Scholar
- Re: [AMBER] ff14SBonlysc + OPC3 David A Case
- Re: [AMBER] ff14SBonlysc + OPC3 Daniel Roe
- Re: [AMBER] Error in Installing Amber 20 on GPU David A Case
- Re: [AMBER] centos 7 install Ambertools20 error, final link failed: Bad value David A Case
- Re: [AMBER] pmemd.MPI and minization trajectories David A Case
- Re: [AMBER] ff14SBonlysc + OPC3 Matias Machado
- Re: [AMBER] error message create parameters David A Case
- Re: [AMBER] ff14SBonlysc + OPC3 Matias Machado
- Re: [AMBER] pmemd.MPI and minization trajectories Seibold, Steve Allan
- Re: [AMBER] Is there a method that can calculate the angle between two planes? Wesley Michael Botello-Smith
- Re: [AMBER] Problems with RMSF calculations kartik.lakshmi.gmail.com
- [AMBER] An Error with MMPBSA.py in AmberTools 17 Ibrahim Mohamed
- Re: [AMBER] ff14SBonlysc + OPC3 Daniel Roe
- Re: [AMBER] Ligand movement w.r.t protein backbone Daniel Roe
- Re: [AMBER] Problems with RMSF calculations Daniel Roe
- Re: [AMBER] Problems with RMSF calculations kartik.lakshmi.gmail.com
- Re: [AMBER] ff14SBonlysc + OPC3 David A Case
- Re: [AMBER] Error in Installing Amber 20 on GPU Suchetana Gupta
- Re: [AMBER] centos 7 install Ambertools20 error, final link failed: Bad value Gustaf Olsson
- [AMBER] add NO3- ions 费俊文
Tuesday, 30 June 2020
- [AMBER] "Does not have a type" error in tleap Jatin Kashyap
- Re: [AMBER] "Does not have a type" error in tleap Elvis Martis
- Re: [AMBER] ff14SBonlysc + OPC3 Fabian Glaser
- [AMBER] Zwitter ionic form of a residue Sunita Patel
- Re: [AMBER] Error in Installing Amber 20 on GPU David A Case
- Re: [AMBER] centos 7 install Ambertools20 error, final link failed: Bad value David A Case
- Re: [AMBER] Ligand movement w.r.t protein backbone Debarati DasGupta
- Re: [AMBER] Zwitter ionic form of a residue Dr. Anselm Horn
- [AMBER] interaction entropy calculation Hector A. Baldoni
- Re: [AMBER] "Does not have a type" error in tleap Jatin Kashyap

Last message date: Tue Jun 30 2020 - 13:30:03 PDT
Archived on: Wed Apr 24 2024 - 05:55:57 PDT

Amber Archive Jun 2020 by date