Hi,
Have you tried the 'byresidue' keyword?
-Dan
On Wed, Apr 29, 2020 at 2:35 AM mohamed marzouk
<mohamedmarzoukphysics.gmail.com> wrote:
>
> Hello everyone;
> I want to know the contact residues between protein and DNA in complex at 5A as example, so it’s easy to use nativecontacts function in cpptraj. However I want to know only the residue of contacts without repeat for every atom.
> To indicate by example
> I need to get residues from DNA are 2,4,6,78,89 and so on, but the out put may write residue 4 for 6 times due to 6 different atoms from 4th residue make 6 contacts with residue from protein I am not interesting in this repeatation.
> How can I get this desired contacts for residues without repeat for every atom???
>
> Best regards,
> Mohamed Marzouk Sobeh
> Ph.D student at Life Science and Technology, Tokyo Institute of Technology, Tokyo, Japan.
> T.A Physics department,Ain Shams University, Cairo, Egypt.
> Emails:
> mohamed_marzouk.sci.asu.edu.eg
> marzouk.aa.m.titech.ac.jp
> marzouk_biophysics.yahoo.com
> mohamedmarzoukphysics.gmail.com
>
> Mob. and WhatsApp.:
> +81 070-4070-9549
> +2 01061417414
>
>
> _______________________________________________
> AMBER mailing list
> AMBER.ambermd.org
> http://lists.ambermd.org/mailman/listinfo/amber
_______________________________________________
AMBER mailing list
AMBER.ambermd.org
http://lists.ambermd.org/mailman/listinfo/amber
Received on Wed Jun 24 2020 - 09:00:03 PDT
