Hi,
Take a look at this tutorial, specifically the analysis section:
https://amberhub.chpc.utah.edu/analisis-of-nucleic-acid-simulation/
-Christina
> On Jun 25, 2020, at 3:25 PM, Athena N <athena.nas01.gmail.com> wrote:
>
> Respected group members,
>
> I have run a 500ns simulation run on a DNA duplex and want to analyze some
> parameters like groove width. I have no idea how to use the nastruct
> command. Since I am a beginner, I don't have much idea about how to use the
> output nc trajectory file to do these. I have read that we can use AMBER
> for all these analysis like 3DNA does. Could anyone give me some idea of
> using the nastruct command?
>
>
> Thank you. Regards
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Received on Thu Jun 25 2020 - 12:30:03 PDT
