Assuming all of the other prerequisites are covered regarding compilers and things, having untarred the tarball you should
$ cd /path/to/amber18
and running pwd should produce something ending in /amber18, as in
/home/xxxxxxx/amber18
Assuming your username is xxxxxxx and you unpacked the tarball in you user home directory. Once this is done you should start by running:
./configure gnu
You should then allow updates to install, do use miniconda to install other dependencies to make life easier and finally, depending on the output from the configure script, once it stops running, you should either compile using “make install” or post any additional errors here.
Fingers crossed and best regards
// Gustaf
> On 26 Jun 2020, at 01:38, Joanna Michelle E. Chua <jmechua.pnri.dost.gov.ph> wrote:
>
> Hi Renato
>
> I mixed up sorry. I did config gnu. Should I paste the entire result?
>
> Joanna
>
> Get Outlook for Android<https://aka.ms/ghei36>
> ________________________________
> From: Renato Araujo <renatoacufpa.gmail.com>
> Sent: Friday, June 26, 2020 1:32:54 AM
> To: AMBER Mailing List <amber.ambermd.org>
> Subject: Re: [AMBER] Problems with Make install Amber 18
>
> Hi Joanna
>
> You gave the command
>
> . \ configure gnu
>
> in the amber18 directory.
>
> Then he exulted
>
> make install
>
> Is that what you did?
>
> Renato
>
> Em qui., 25 de jun. de 2020 às 13:08, Joanna Michelle E. Chua <
> jmechua.pnri.dost.gov.ph> escreveu:
>
>> Hi Gustaf,
>>
>> I am installing Amber 18 using Ubuntu 18.04 LTS.
>>
>> When I perform ./configure /home/user/amber18 there is no output. And yes
>> I already added AMBERHOME in my path.
>>
>> Joanna
>> ________________________________
>> From: Gustaf Olsson <gustaf.olsson.lnu.se>
>> Sent: Thursday, June 25, 2020 2:15 PM
>> To: AMBER Mailing List <amber.ambermd.org>
>> Subject: Re: [AMBER] Problems with Make install Amber 18
>>
>> Well, with a lot of unknowns it is hard to say.
>>
>> On what OS and version are you trying to compile?
>>
>> What settings did you use running the “./configure” script and what was
>> the output?
>>
>> Have you added AMBERHOME to you path?
>>
>> With this information it might be a little bit easier to provide
>> suggestions on how to proceed.
>>
>> Best regards
>> // Gustaf
>>
>>
>>> On 25 Jun 2020, at 05:26, Joanna Michelle E. Chua <
>> jmechua.pnri.dost.gov.ph> wrote:
>>>
>>> Hi all,
>>>
>>> Whenever I perform make install I see these failed codes
>>>
>>> Makefile:192: recipe for target 'xaLeap' failed
>>> make[4]: *** [xaLeap] Error 1
>>> make[4]: Leaving directory
>> '/home/itsrdc/amber18/AmberTools/src/leap/src/leap'
>>> Makefile:18: recipe for target 'install_xleap' failed
>>> make[3]: *** [install_xleap] Error 2
>>> make[3]: Leaving directory '/home/itsrdc/amber18/AmberTools/src/leap'
>>> Makefile:4: recipe for target 'install' failed
>>> make[2]: *** [install] Error 2
>>> make[2]: Leaving directory '/home/itsrdc/amber18/AmberTools/src/leap'
>>> Makefile:26: recipe for target 'serial' failed
>>> make[1]: *** [serial] Error 2
>>> make[1]: Leaving directory '/home/itsrdc/amber18/AmberTools/src'
>>> Makefile:7: recipe for target 'install' failed
>>> make: *** [install] Error 2
>>>
>>> It was consistent. whenever I perform make clean and repeat the source
>> and make install again I still see the same. Has anyone experienced the
>> same? Thank you.
>>>
>>> Joanna Michelle Chua, RPh
>>> Science Research Specialist I
>>> Isotope Techniques Section
>>> Nuclear Services Division
>>> Philippine Nuclear Research Institute
>>> Tel. no. (+632) 8929 6011 to 14 loc. 240
>>> Mobile No. (+63) 917 845 4137
>>> _______________________________________________
>>> AMBER mailing list
>>> AMBER.ambermd.org
>>> http://lists.ambermd.org/mailman/listinfo/amber
>>
>> _______________________________________________
>> AMBER mailing list
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>>
>
>
> --
> Prof Dr Renato Costa
> Instituto Federal do Pará - IFPA
> Grupo de Modelagem Molecular - UFPA
> Tel.+55 91 985484622
> _______________________________________________
> AMBER mailing list
> AMBER.ambermd.org
> http://lists.ambermd.org/mailman/listinfo/amber
> _______________________________________________
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Received on Thu Jun 25 2020 - 23:30:04 PDT
