[AMBER] Cluster analysis: the result was strange

From: Nada Afiva <nadaafiva.gmail.com>
Date: Sat, 20 Jun 2020 15:57:48 +0700

Dear Amber,
I performed a cluster analysis using the input below.
However, I got a strange result in which the file
show one straight line only.
Hope you can help me.
Thank you in advance.


Here is my input file
# Cluster analysis with cpptraj.

parm x1d1.prmtop
trajin nowat.prod.nc

cluster C0 \
        dbscan minpoints 25 epsilon 0.9 sievetoframe \
        rms :1-1079.CA \
        sieve 10 \
        out cluster-x1d1.dat \
        summary cluster-summary-x1d1.dat \
        info cluster-info-x1d1.dat \
        cpopvtime cluster-cpopvtime-x1d1.agr normframe \
        repout rep-cluster-x1d1 repfmt pdb \
        singlerepout cluster-x1d1.nc singlerepfmt netcdf \
        avgout cluster-avg-x1d1 avgfmt restart
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Received on Sat Jun 20 2020 - 02:00:02 PDT
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