Amber Archive Nov 2018: by subject

[AMBER-Developers] [AMBER] CPPTRAJ "usefrcascoords"
- Daniel Roe (Fri Nov 09 2018 - 12:22:56 PST)
[AMBER-Developers] [AMBER] regarding ambpdb
- David Case (Sun Nov 18 2018 - 05:23:12 PST)
[AMBER] 02_03.rms problem
- Daniel Roe (Thu Nov 08 2018 - 05:08:49 PST)
- simon chapman (Wed Nov 07 2018 - 13:16:08 PST)
- simon chapman (Mon Nov 05 2018 - 14:09:42 PST)
- Daniel Roe (Mon Nov 05 2018 - 06:39:48 PST)
- simon chapman (Sat Nov 03 2018 - 07:49:19 PDT)
- Daniel Roe (Sat Nov 03 2018 - 06:41:53 PDT)
- simon chapman (Sat Nov 03 2018 - 02:08:29 PDT)
[AMBER] About dpeaks implementation in cpptraj
- Casalini Tommaso (Mon Nov 19 2018 - 07:47:10 PST)
- Daniel Roe (Mon Nov 19 2018 - 06:23:26 PST)
- Casalini Tommaso (Mon Nov 19 2018 - 05:49:19 PST)
[AMBER] Accelerated MD stopped with Cuda GPU error.
- David Case (Thu Nov 08 2018 - 05:49:37 PST)
- accuratefreeenergy.gmail.com (Wed Nov 07 2018 - 20:31:34 PST)
- Bill Ross (Wed Nov 07 2018 - 20:23:34 PST)
- M RCC (Wed Nov 07 2018 - 19:21:54 PST)
- Bill Ross (Wed Nov 07 2018 - 01:53:54 PST)
- M RCC (Wed Nov 07 2018 - 01:32:57 PST)
- Bill Ross (Mon Nov 05 2018 - 00:25:41 PST)
- Bill Ross (Mon Nov 05 2018 - 00:08:43 PST)
- M RCC (Sun Nov 04 2018 - 23:10:11 PST)
[AMBER] Acpype error. No such file or directory
- neelam wafa (Mon Nov 05 2018 - 07:18:51 PST)
[AMBER] amber 18 compilation issue
- Stephan Schott (Wed Nov 07 2018 - 08:57:07 PST)
- Vlad Cojocaru (Wed Nov 07 2018 - 07:54:51 PST)
- Stephan Schott (Wed Nov 07 2018 - 07:21:54 PST)
- David A Case (Wed Nov 07 2018 - 05:05:23 PST)
- Vlad Cojocaru (Tue Nov 06 2018 - 06:29:54 PST)
[AMBER] Amber 18 memory
- Bill Ross (Thu Nov 15 2018 - 13:40:15 PST)
- Beale, John (Thu Nov 15 2018 - 01:05:19 PST)
[AMBER] amber18 pmemd.MPI compile fails with Fatal Error: Can't delete temporary module file 'memory_module.mod0': No such file or directory
- Dow Hurst (Wed Oct 31 2018 - 22:42:14 PDT)
- Dow Hurst (Wed Oct 31 2018 - 21:23:59 PDT)
[AMBER] Announcement: Release of DOCK 6.9
- Scott Brozell (Tue Nov 27 2018 - 17:29:21 PST)
[AMBER] Ante-MMPBSA.py error
- David Case (Sun Nov 25 2018 - 12:06:45 PST)
- jacky zhao (Sat Nov 24 2018 - 19:05:54 PST)
[AMBER] antechamber
- David A Case (Mon Nov 19 2018 - 05:27:18 PST)
- soukaina louerdi (Mon Nov 19 2018 - 03:29:51 PST)
[AMBER] Antechamber for PCBM
- soukaina louerdi (Fri Nov 23 2018 - 14:12:04 PST)
- Maura Malinska (Fri Nov 23 2018 - 09:01:20 PST)
- soukaina louerdi (Fri Nov 23 2018 - 07:37:24 PST)
- David Case (Mon Nov 19 2018 - 14:27:18 PST)
- David Case (Mon Nov 19 2018 - 14:22:58 PST)
- soukaina louerdi (Mon Nov 19 2018 - 11:17:19 PST)
- David A Case (Mon Nov 19 2018 - 05:28:36 PST)
- soukaina louerdi (Thu Nov 15 2018 - 05:07:50 PST)
[AMBER] Antechamber with protonated arginine
- Junmei Wang (Tue Nov 20 2018 - 12:50:52 PST)
- Jaime Rubio Martinez (Tue Nov 20 2018 - 08:47:34 PST)
- David Case (Thu Nov 15 2018 - 05:41:30 PST)
- Jose Manuel Granadino Roldán (Wed Nov 14 2018 - 23:05:12 PST)
[AMBER] Building crystal structures
- David Cerutti (Thu Nov 15 2018 - 13:25:26 PST)
- Ali Khodayari (Thu Nov 15 2018 - 13:16:12 PST)
- David Cerutti (Thu Nov 15 2018 - 11:41:54 PST)
- Ali Khodayari (Thu Nov 15 2018 - 11:28:52 PST)
[AMBER] Choosing a temperature schedule for Simulated annealing
- Rajbinder Kaur Virk (Wed Nov 28 2018 - 23:19:39 PST)
[AMBER] Combining GAFF and GLYCAM force fields to describe a non-natural sugar
- David Cerutti (Thu Nov 29 2018 - 08:59:30 PST)
- José Daniel Martinez (Thu Nov 29 2018 - 00:52:44 PST)
- José Daniel Martinez (Thu Nov 29 2018 - 00:52:14 PST)
- Lachele Foley (Wed Nov 28 2018 - 11:19:14 PST)
- David Cerutti (Wed Nov 28 2018 - 10:53:58 PST)
- José Daniel Martinez (Wed Nov 28 2018 - 08:50:38 PST)
[AMBER] Correction needed for output of energy action command in cpptraj
- Daniel Roe (Wed Nov 28 2018 - 07:49:25 PST)
- Daniel Roe (Mon Nov 19 2018 - 10:14:58 PST)
- Veenis, Andrew Jay (Mon Nov 19 2018 - 10:02:18 PST)
[AMBER] CpH simulation- error reading charges in long cpin file
- Cruzeiro,Vinicius Wilian D (Thu Nov 01 2018 - 12:57:38 PDT)
- Amy Rice (Thu Nov 01 2018 - 12:49:47 PDT)
- Cruzeiro,Vinicius Wilian D (Thu Nov 01 2018 - 12:33:52 PDT)
- Amy Rice (Thu Nov 01 2018 - 09:28:54 PDT)
[AMBER] CPPTRAJ "usefrcascoords"
- SARAH JEANNE LEFAVE (Mon Nov 26 2018 - 09:31:26 PST)
- SARAH JEANNE LEFAVE (Fri Nov 09 2018 - 12:35:37 PST)
- Daniel Roe (Fri Nov 09 2018 - 12:17:20 PST)
- SARAH JEANNE LEFAVE (Thu Nov 08 2018 - 13:31:37 PST)
- Daniel Roe (Thu Nov 08 2018 - 12:56:10 PST)
- SARAH JEANNE LEFAVE (Thu Nov 08 2018 - 12:50:44 PST)
- Daniel Roe (Thu Nov 08 2018 - 12:46:45 PST)
- SARAH JEANNE LEFAVE (Thu Nov 08 2018 - 12:33:36 PST)
[AMBER] cpptraj eroor
- Rajbinder Kaur Virk (Sun Nov 18 2018 - 05:33:03 PST)
[AMBER] cpptraj error
- Daniel Roe (Mon Nov 19 2018 - 10:04:59 PST)
- Carlos Simmerling (Mon Nov 19 2018 - 09:31:27 PST)
- Charu Sharma (JRF) (Mon Nov 19 2018 - 09:22:15 PST)
- Daniel Roe (Mon Nov 19 2018 - 06:00:25 PST)
- Rajbinder Kaur Virk (Mon Nov 19 2018 - 04:59:02 PST)
[AMBER] CPPTRAJ/PnetCDF error
- Daniel Roe (Mon Nov 26 2018 - 06:39:23 PST)
- Nikolay N. Kuzmich (Wed Nov 21 2018 - 01:34:37 PST)
[AMBER] CUDA 10.0 vs CUDA 9.2 for Amber18&1080Ti GTX - any gain in performance?
- Nikolay N. Kuzmich (Fri Nov 02 2018 - 02:12:44 PDT)
[AMBER] CUDA problems in Amber18
- Julio Dominguez (Wed Nov 21 2018 - 14:09:06 PST)
- Ross Walker (Mon Nov 19 2018 - 18:14:40 PST)
- Julio Dominguez (Sun Nov 18 2018 - 19:33:30 PST)
[AMBER] different residue numbering
- Daniel Roe (Wed Nov 14 2018 - 15:33:38 PST)
- Daniel Roe (Tue Nov 06 2018 - 12:59:28 PST)
- Rosellen, Martin (Tue Nov 06 2018 - 07:27:37 PST)
[AMBER] Energies
- David A Case (Mon Nov 12 2018 - 10:03:25 PST)
- SARAH JEANNE LEFAVE (Mon Nov 12 2018 - 08:14:56 PST)
[AMBER] equilibration of Packmol generated boxes
- Arkajyoti Sengupta (Wed Nov 28 2018 - 15:30:31 PST)
[AMBER] Error while using antechamber (AMBER 18)
- David Case (Thu Nov 08 2018 - 05:52:54 PST)
- RITUPARNA ROY (Wed Nov 07 2018 - 23:08:13 PST)
[AMBER] Errors regarding generation of parameter file
- shivangi agarwal (Mon Nov 19 2018 - 06:54:54 PST)
- David A Case (Mon Nov 19 2018 - 05:20:23 PST)
- shivangi agarwal (Sun Nov 18 2018 - 19:15:50 PST)
[AMBER] Failed to merge the protein-ligand amoeba parameters
- 王茜茜 (Wed Nov 28 2018 - 05:38:18 PST)
- David A Case (Wed Nov 28 2018 - 04:43:48 PST)
- 王茜茜 (Tue Nov 27 2018 - 00:46:01 PST)
[AMBER] Files work with sander and not pmemd
- Nicolas Cheron (Tue Nov 13 2018 - 02:03:57 PST)
- David Case (Mon Nov 12 2018 - 14:20:22 PST)
- Nicolas Cheron (Wed Nov 07 2018 - 03:12:38 PST)
[AMBER] free energy calculation for restraining ligand
- Sukanya Sasmal (Thu Nov 29 2018 - 18:27:53 PST)
[AMBER] Generating topologies with antechamber and acpype
- neelam wafa (Wed Nov 07 2018 - 01:37:16 PST)
[AMBER] Generation of velocities depends on conformation?
- Nicolas Cheron (Thu Nov 08 2018 - 00:54:59 PST)
- David A Case (Wed Nov 07 2018 - 04:52:24 PST)
- Thomas Cheatham (Wed Nov 07 2018 - 04:15:05 PST)
- Nicolas Cheron (Wed Nov 07 2018 - 02:44:11 PST)
[AMBER] Geometric hard constraints
- Charo del Genio (Wed Nov 07 2018 - 02:44:16 PST)
[AMBER] Getting error for MMPB/GBSA calculaton
- David Case (Fri Nov 23 2018 - 06:47:34 PST)
- Saikat Pal (Thu Nov 22 2018 - 07:44:49 PST)
[AMBER] GPU card for AMBER
- Fabian Glaser (Sun Nov 18 2018 - 08:20:36 PST)
- Ross Walker (Sat Nov 17 2018 - 02:15:02 PST)
- Fabian Glaser (Thu Nov 15 2018 - 03:16:43 PST)
[AMBER] graph
- Markowska (Fri Nov 16 2018 - 22:43:50 PST)
- Charu Sharma (JRF) (Fri Nov 16 2018 - 22:01:24 PST)
[AMBER] Hamiltonian Replica Exchange with Amber 18
- Bruno Falcone (Mon Nov 26 2018 - 13:22:48 PST)
- Jason Swails (Mon Nov 26 2018 - 08:20:36 PST)
- Bruno Falcone (Fri Nov 23 2018 - 07:28:29 PST)
[AMBER] Head-to-tail cyclized Peptides
- Dr. Anselm Horn (Fri Nov 30 2018 - 07:16:27 PST)
- David A Case (Fri Nov 30 2018 - 05:06:06 PST)
- Pietro Aronica (Thu Nov 29 2018 - 21:37:21 PST)
- Bill Ross (Thu Nov 29 2018 - 21:11:57 PST)
- Pietro Aronica (Thu Nov 29 2018 - 20:46:30 PST)
[AMBER] Help regarding AMBER16 CUDA installation
- David A Case (Wed Nov 07 2018 - 04:43:28 PST)
- Bill Ross (Wed Nov 07 2018 - 00:55:35 PST)
- Saikat Dutta chowdhury (Wed Nov 07 2018 - 00:29:44 PST)
- Hai Nguyen (Tue Nov 06 2018 - 20:46:13 PST)
- Saikat Dutta chowdhury (Tue Nov 06 2018 - 20:04:48 PST)
- David Case (Tue Nov 06 2018 - 16:54:16 PST)
- Saikat Dutta chowdhury (Tue Nov 06 2018 - 05:13:29 PST)
[AMBER] how long should a NPT equilibrium take in QM/MM MD?
- Joan Torras (Mon Nov 12 2018 - 18:05:11 PST)
- David Case (Mon Nov 12 2018 - 17:22:17 PST)
- 郭昱 (Mon Nov 12 2018 - 17:17:56 PST)
- David Case (Mon Nov 12 2018 - 14:16:48 PST)
- Meng Wu (Mon Nov 12 2018 - 02:28:14 PST)
[AMBER] Implicit solvent simulation effects for the folding
- Carlos Simmerling (Tue Nov 06 2018 - 03:32:54 PST)
- Mijiddorj B (Mon Nov 05 2018 - 20:50:14 PST)
- Hai Nguyen (Mon Nov 05 2018 - 20:16:50 PST)
- Mijiddorj B (Mon Nov 05 2018 - 19:17:47 PST)
[AMBER] Installation & testing of AMBER18 parallel GPU problem
- Ibrahim M. Moustafa (Fri Nov 30 2018 - 09:38:11 PST)
[AMBER] Interplane angles using vector and vectormath in cpptraj
- Daniel Roe (Wed Nov 07 2018 - 05:54:30 PST)
[AMBER] IR Spectra
- David Case (Mon Nov 05 2018 - 17:40:00 PST)
- Abdullah Bin Faheem (Sun Nov 04 2018 - 22:07:16 PST)
[AMBER] Latest force field
- andreas.tosstorff.cup.uni-muenchen.de (Sun Nov 25 2018 - 09:28:27 PST)
- shivangi agarwal (Sat Nov 24 2018 - 09:15:50 PST)
[AMBER] leap warning: The unperturbed charge of the unit: -0.388000 is not integral, can I proceed for MD with such warning?
- maryam azimzadehirani (Tue Nov 13 2018 - 23:10:11 PST)
- maryam azimzadehirani (Tue Nov 13 2018 - 06:06:15 PST)
- Lachele Foley (Tue Nov 13 2018 - 05:57:59 PST)
- Dr. Anselm Horn (Tue Nov 13 2018 - 04:50:58 PST)
- David Cerutti (Mon Nov 12 2018 - 23:49:45 PST)
- maryam azimzadehirani (Mon Nov 12 2018 - 23:41:42 PST)
- Casalini Tommaso (Mon Nov 12 2018 - 23:39:40 PST)
- David Cerutti (Mon Nov 12 2018 - 23:24:20 PST)
- maryam azimzadehirani (Mon Nov 12 2018 - 06:10:17 PST)
- Casalini Tommaso (Mon Nov 12 2018 - 05:36:45 PST)
- David A Case (Mon Nov 12 2018 - 05:26:58 PST)
- ABEL Stephane (Mon Nov 12 2018 - 05:23:17 PST)
- maryam azimzadehirani (Mon Nov 12 2018 - 04:05:02 PST)
- David Cerutti (Sun Nov 11 2018 - 23:03:04 PST)
- maryam azimzadehirani (Sun Nov 11 2018 - 04:40:39 PST)
[AMBER] ligand force field
- Matias Machado (Fri Nov 09 2018 - 07:41:26 PST)
- hosein geraili (Fri Nov 02 2018 - 11:22:13 PDT)
[AMBER] Linear Interaction Energy
- Pietro Aronica (Thu Nov 29 2018 - 01:43:51 PST)
[AMBER] MCPB.py
- Pengfei Li (Sat Nov 10 2018 - 15:18:59 PST)
- Viviani, Lucas (Wed Nov 07 2018 - 02:49:48 PST)
[AMBER] md production
- Charu Sharma (JRF) (Fri Nov 16 2018 - 21:07:57 PST)
[AMBER] MD_Box_size_and_counterions_counting_general_rule
- Antonio Amber Carlesso (Thu Nov 08 2018 - 01:43:16 PST)
[AMBER] Minimisation and periodic boundaries.
- Stejskal, Lenka (Wed Nov 28 2018 - 12:17:14 PST)
- Sally Pias (Wed Nov 28 2018 - 10:53:55 PST)
- Stejskal, Lenka (Wed Nov 28 2018 - 09:56:30 PST)
[AMBER] new amber mailing list for beginner questions
- Luca Codutti (Thu Nov 15 2018 - 04:05:02 PST)
- Paul Westphälinger (Thu Nov 15 2018 - 03:19:28 PST)
[AMBER] new amber mailing list for beginner questions/mailing list for advanced users&bug reports
- Lachele Foley (Tue Nov 27 2018 - 12:49:29 PST)
- Daniel Roe (Tue Nov 27 2018 - 06:34:31 PST)
- Paul Westphälinger (Tue Nov 27 2018 - 03:18:07 PST)
- Jason Swails (Mon Nov 26 2018 - 08:44:44 PST)
- Paul Westphälinger (Mon Nov 26 2018 - 01:15:01 PST)
[AMBER] non-bonded params
- Matias Machado (Fri Nov 09 2018 - 07:32:01 PST)
- hosein geraili (Wed Nov 07 2018 - 00:31:31 PST)
- Matias Machado (Fri Nov 02 2018 - 12:11:26 PDT)
- hosein geraili (Fri Nov 02 2018 - 09:50:47 PDT)
[AMBER] Non-convergence when calculating partial charges for aromatic-adjacent nitriles
- Jeffrey Wagner (Tue Nov 06 2018 - 08:06:02 PST)
- David A Case (Mon Nov 05 2018 - 11:11:22 PST)
- James Kress (Fri Nov 02 2018 - 12:02:27 PDT)
- Jeffrey Wagner (Fri Nov 02 2018 - 10:50:49 PDT)
[AMBER] Obtaining contact maps with cpptraj
- Stefan Ivanov (Thu Nov 22 2018 - 20:47:59 PST)
[AMBER] Parametrs for Targeted MD
- Mohamad Reza G. (Sat Nov 24 2018 - 03:52:26 PST)
[AMBER] phosphorylated peptide with implicit solvent
- David A Case (Fri Nov 09 2018 - 05:17:44 PST)
[AMBER] polymer state
- hosein geraili (Thu Nov 22 2018 - 12:26:26 PST)
- andreas.tosstorff.cup.uni-muenchen.de (Thu Nov 22 2018 - 10:00:46 PST)
- hosein geraili (Thu Nov 22 2018 - 07:35:38 PST)
[AMBER] Post-doctoral position in MD at UC Riverside
- giulia palermo (Fri Nov 09 2018 - 23:57:30 PST)
[AMBER] post-simulation thermodynamic integration calculations
- Veenis, Andrew Jay (Fri Nov 09 2018 - 09:57:29 PST)
- David A Case (Fri Nov 09 2018 - 05:26:04 PST)
- Veenis, Andrew Jay (Thu Nov 08 2018 - 12:17:03 PST)
[AMBER] Post_analysis_Amber_tools_suggestion
- Antonio Amber Carlesso (Sun Nov 18 2018 - 06:09:51 PST)
[AMBER] Postdoctoral position in the area of FFT-based binding free energy calculations
- David Minh (Fri Nov 02 2018 - 10:59:01 PDT)
[AMBER] Preparation of force field of zwitterion glycine molecule
- euq1702 (Mon Nov 12 2018 - 06:20:44 PST)
- David A Case (Mon Nov 12 2018 - 05:36:44 PST)
- euq1702 (Sun Nov 11 2018 - 08:14:49 PST)
[AMBER] Problem in designing MD simulation based on Experimental data
- Chris Moth (Fri Nov 16 2018 - 06:16:40 PST)
- Bharat Manna (Fri Nov 16 2018 - 07:53:12 PST)
[AMBER] problem of GPU with ibelly
- David Case (Thu Nov 08 2018 - 05:41:39 PST)
- Hadi Rahmaninejad (Wed Nov 07 2018 - 15:59:19 PST)
- David A Case (Wed Nov 07 2018 - 11:50:30 PST)
- Hadi Rahmaninejad (Wed Nov 07 2018 - 08:05:44 PST)
[AMBER] Problem regarding radial command
- Daniel Roe (Mon Nov 05 2018 - 07:12:29 PST)
[AMBER] Problem with obtaining iodine parameters via R.E.D. Server
- Markowska (Sun Nov 18 2018 - 23:32:33 PST)
- Markowska (Thu Nov 08 2018 - 04:29:21 PST)
[AMBER] Protein residues CA atoms treated as sidechain in binding energy decomposition?
- 鲍劲霄 (Fri Nov 02 2018 - 07:58:31 PDT)
[AMBER] QMMM free energy calculations for alchemical changes using a coupling parameter in amber 18
- David A Case (Fri Nov 30 2018 - 05:15:20 PST)
- E. Kuechler (Thu Nov 29 2018 - 17:13:32 PST)
- Brian Radak (Thu Nov 29 2018 - 13:56:36 PST)
- Adrian Roitberg (Thu Nov 29 2018 - 11:31:18 PST)
- Goetz, Andreas (Thu Nov 29 2018 - 11:23:14 PST)
- Adrian Roitberg (Thu Nov 29 2018 - 10:46:48 PST)
- Braden Kelly (Thu Nov 29 2018 - 10:35:40 PST)
- Brian Radak (Thu Nov 29 2018 - 07:18:06 PST)
- Braden Kelly (Wed Nov 28 2018 - 13:15:14 PST)
- David Case (Tue Nov 27 2018 - 18:51:46 PST)
- Brian Radak (Tue Nov 27 2018 - 08:51:35 PST)
- Braden Kelly (Tue Nov 27 2018 - 00:10:01 PST)
[AMBER] query
- Keiran Corbett (Tue Nov 13 2018 - 00:40:59 PST)
- Charu Sharma (JRF) (Mon Nov 12 2018 - 22:27:35 PST)
[AMBER] Radial Distribution Function of Waters with respect to a particular Atom
- Daniel Roe (Wed Nov 14 2018 - 15:57:35 PST)
- diego.soler.uam.es (Wed Nov 14 2018 - 02:11:06 PST)
[AMBER] reconstruction of pH-based trajectory files
- Elvira Tarasova (Sat Nov 17 2018 - 05:09:41 PST)
- Daniel Roe (Fri Nov 16 2018 - 07:11:03 PST)
- Elvira Tarasova (Thu Nov 15 2018 - 20:21:36 PST)
- Daniel Roe (Thu Nov 15 2018 - 05:15:21 PST)
- Elvira Tarasova (Wed Nov 14 2018 - 20:25:15 PST)
[AMBER] regarding ambpdb
- Bill Ross (Sun Nov 18 2018 - 05:12:43 PST)
- Charu Sharma (JRF) (Sun Nov 18 2018 - 03:45:51 PST)
- Elvis Martis (Sun Nov 18 2018 - 03:13:42 PST)
- Charu Sharma (JRF) (Sun Nov 18 2018 - 01:22:59 PST)
[AMBER] regarding creation of production MD output
- Charu Sharma (JRF) (Fri Nov 16 2018 - 08:48:52 PST)
- Chetna Tyagi (Fri Nov 16 2018 - 08:27:29 PST)
- Charu Sharma (JRF) (Fri Nov 16 2018 - 08:33:23 PST)
[AMBER] regarding MD simulation
- Charu Sharma (JRF) (Wed Nov 14 2018 - 02:57:36 PST)
[AMBER] Regarding output file processing of temperature replica exchange
- Carlos Simmerling (Mon Nov 26 2018 - 09:10:21 PST)
- Rajarshi Roy (Mon Nov 26 2018 - 08:37:42 PST)
- Thomas Cheatham (Sat Nov 24 2018 - 18:53:20 PST)
- Rajarshi Roy (Sat Nov 24 2018 - 09:45:51 PST)
- Daniel Roe (Mon Nov 19 2018 - 06:34:30 PST)
- Rajarshi Roy (Fri Nov 16 2018 - 09:46:50 PST)
- Daniel Roe (Fri Nov 16 2018 - 06:59:13 PST)
- Rajarshi Roy (Fri Nov 16 2018 - 00:13:36 PST)
- Daniel Roe (Wed Nov 14 2018 - 06:10:06 PST)
- Rajarshi Roy (Wed Nov 14 2018 - 04:01:50 PST)
[AMBER] regarding ter
- Vaibhav Dixit (Sat Nov 03 2018 - 22:49:47 PDT)
- Charu Sharma (JRF) (Sat Nov 03 2018 - 22:39:15 PDT)
[AMBER] Regarding the Targeted MD
- M. Reza Ganjalikhany (Fri Nov 30 2018 - 05:25:08 PST)
- Carlos Simmerling (Fri Nov 30 2018 - 04:29:03 PST)
- M. Reza Ganjalikhany (Fri Nov 30 2018 - 01:22:00 PST)
- Carlos Simmerling (Thu Nov 29 2018 - 14:38:11 PST)
- M. Reza Ganjalikhany (Thu Nov 29 2018 - 05:31:29 PST)
- Carlos Simmerling (Mon Nov 26 2018 - 12:53:42 PST)
- Carlos Simmerling (Mon Nov 26 2018 - 12:52:42 PST)
- M. Reza Ganjalikhany (Mon Nov 26 2018 - 12:25:11 PST)
- M. Reza Ganjalikhany (Mon Nov 26 2018 - 12:21:59 PST)
[AMBER] REGARDING TUTORIAL
- David A Case (Wed Nov 21 2018 - 06:46:10 PST)
- Charu Sharma (JRF) (Tue Nov 20 2018 - 15:39:07 PST)
[AMBER] regarding tutorials
- Bill Ross (Mon Nov 12 2018 - 22:26:12 PST)
- Charu Sharma (JRF) (Mon Nov 12 2018 - 21:41:28 PST)
[AMBER] REMD: What can I do with much larger replicas than the number of processors
- Zhonghua Xia (Fri Nov 09 2018 - 05:27:07 PST)
- Wesley Michael Botello-Smith (Wed Nov 07 2018 - 14:40:14 PST)
- Qinghua Liao (Wed Nov 07 2018 - 11:43:00 PST)
- Carlos Simmerling (Wed Nov 07 2018 - 11:37:29 PST)
- Cruzeiro,Vinicius Wilian D (Wed Nov 07 2018 - 07:50:20 PST)
- Zhonghua Xia (Wed Nov 07 2018 - 07:22:51 PST)
[AMBER] reminder
- Chhaya Singh (Thu Nov 29 2018 - 09:13:50 PST)
[AMBER] RESP charge calculation
- Aashish Bhatt (Mon Nov 26 2018 - 04:43:09 PST)
[AMBER] RMSD
- Charu Sharma (JRF) (Sun Nov 25 2018 - 22:01:47 PST)
[AMBER] RMSD mask selection and closestwater clarification
- Korey M Reid (Thu Nov 15 2018 - 14:18:28 PST)
- Daniel Roe (Thu Nov 15 2018 - 05:12:01 PST)
- Korey M Reid (Tue Nov 13 2018 - 14:40:05 PST)
- Korey M Reid (Tue Nov 13 2018 - 14:17:06 PST)
[AMBER] RMSF
- Charu Sharma (JRF) (Sun Nov 25 2018 - 20:34:12 PST)
- David Case (Sat Nov 24 2018 - 06:41:26 PST)
- Charu Sharma (JRF) (Sat Nov 24 2018 - 03:25:44 PST)
[AMBER] RTX 2080 slower then 1080 Ti with pmemd 18 ?
- Ross Walker (Wed Nov 21 2018 - 12:43:35 PST)
- Ross Walker (Wed Nov 21 2018 - 12:37:27 PST)
- Alain Chaumont (Wed Nov 21 2018 - 11:24:29 PST)
[AMBER] Running tleap for topology generation of a list of pdb files.
- Leena Aggarwal (Fri Nov 23 2018 - 21:42:01 PST)
- Alechania Misturini (Fri Nov 23 2018 - 03:39:57 PST)
- Alechania Misturini (Fri Nov 23 2018 - 03:33:56 PST)
- Leena Aggarwal (Fri Nov 23 2018 - 02:44:39 PST)
[AMBER] The interaction energy between substrate molecule and protein
- Meng Wu (Thu Nov 22 2018 - 02:44:55 PST)
[AMBER] the unperturbed charge of the unit is not zero
- soukaina louerdi (Thu Nov 01 2018 - 12:15:15 PDT)
[AMBER] thermostat on solvent
- hosein geraili (Tue Nov 27 2018 - 23:47:19 PST)
[AMBER] tleap gamma-carboxyglutamic acid linkage error
- Rajbinder Kaur Virk (Sat Nov 03 2018 - 01:01:01 PDT)
[AMBER] tLeap sequence overlap with new residues
- David A Case (Mon Nov 12 2018 - 05:18:50 PST)
- David Poole (Sat Nov 10 2018 - 06:45:13 PST)
[AMBER] Velocity autocorrelation function(VACF)
- Daniel Roe (Tue Nov 27 2018 - 05:58:36 PST)
- Aashish Bhatt (Tue Nov 27 2018 - 04:24:28 PST)
[AMBER] very high values of "wrapping mol" when potential boost applied to chloroform solvent system
- Chetna Tyagi (Fri Nov 16 2018 - 02:58:58 PST)
- Chetna Tyagi (Fri Nov 16 2018 - 02:40:39 PST)
- David Case (Thu Nov 15 2018 - 13:30:24 PST)
- Chetna Tyagi (Thu Nov 15 2018 - 05:24:53 PST)
[AMBER] Why does makeCHIR_RST create restraints for side chains?
- Stefan Ivanov (Tue Nov 27 2018 - 10:35:46 PST)
- David A Case (Tue Nov 27 2018 - 10:08:38 PST)
- Stefan Ivanov (Tue Nov 27 2018 - 01:11:39 PST)
[AMBER] xmgrace
- Daniel Roe (Mon Nov 19 2018 - 06:27:10 PST)
- Premila Samuel Mohan Dass (Fri Nov 16 2018 - 21:35:20 PST)
- Charu Sharma (JRF) (Fri Nov 16 2018 - 21:23:11 PST)
[AMBER] 回复： non-bonded params
- 201612095.mail.sdu.edu.cn (Fri Nov 02 2018 - 16:06:10 PDT)

Amber Archive Nov 2018 by subject