Dear all,
I am encountering an error when compiling the serial version of amber
18. See error below.
OS: openSUSE Tumbleweed
GCC: 8.2.1
No errors upon running configure
Does anyone have any idea how to fix this ?
Thank you
Vlad
g++ -Wall -Wextra -Werror -O3 -fPIC -std=c++11 -Isrc -I../boost/1.66/
src/main.o src/pdb.o src/ga.o src/grid.o src/direct.o
-Wl,-rpath=/apps/amber/18_tools-18_openmpi-3.1.3_gnu-8.2.1/AmberTools/src/packmol_memgen/packmol_memgen/lib/memembed/../boost/1.66/stage/lib/
-L/apps/amber/18_tools-18_openmpi-3.1.3_gnu-8.2.1/AmberTools/src/packmol_memgen/packmol_memgen/lib/memembed/../boost/1.66/stage/lib/
-lboost_thread -lboost_system -o bin/memembed
/usr/lib64/gcc/x86_64-suse-linux/8/../../../../x86_64-suse-linux/bin/ld:
src/main.o: undefined reference to symbol
'pthread_condattr_setclock..GLIBC_2.3.3'
/usr/lib64/gcc/x86_64-suse-linux/8/../../../../x86_64-suse-linux/bin/ld:
/lib64/libpthread.so.0: error adding symbols: DSO missing from command line
collect2: error: ld returned 1 exit status
make[4]: *** [Makefile:25: memembed] Error 1
make[4]: Leaving directory
'/apps/amber/18_tools-18_openmpi-3.1.3_gnu-8.2.1/AmberTools/src/packmol_memgen/packmol_memgen/lib/memembed'
make[3]: *** [Makefile:17: install.memembed] Error 2
make[3]: Leaving directory
'/apps/amber/18_tools-18_openmpi-3.1.3_gnu-8.2.1/AmberTools/src/packmol_memgen/packmol_memgen'
--
Vlad Cojocaru, PD (Habil.), Ph.D.
-----------------------------------------------
Project Group Leader
Department of Cell and Developmental Biology
Max Planck Institute for Molecular Biomedicine
Röntgenstrasse 20, 48149 Münster, Germany
-----------------------------------------------
Tel: +49-251-70365-324; Fax: +49-251-70365-399
Email: vlad.cojocaru[at]mpi-muenster.mpg.de
http://www.mpi-muenster.mpg.de/43241/cojocaru
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Received on Tue Nov 06 2018 - 07:00:03 PST
