Re: [AMBER] regarding creation of production MD output

From: Chetna Tyagi <cheta231.gmail.com>
Date: Fri, 16 Nov 2018 17:27:29 +0100

Hi Charu,

You should not attempt to open .mdcrd or .nc files using a text editor or
your terminal.

Load your topology file (.prmtop) and the Prod.mdcrd in a program like VMD
(Visual Molecular Dynamics). http://www.ks.uiuc.edu/Research/vmd/

Good luck!

On Fri, Nov 16, 2018 at 5:33 PM Charu Sharma (JRF) <
charu.sharma.lnmiit.ac.in> wrote:

> Dear all ,
> I m encountering the problem of running in MD output files,i got the below
> result after running according to tutorials .out of three files I am
> getting the only one file The production MD output is in which i am geeting
> the output of 03_prod.out not last two one ?what is the region due to this
> my file 03_prod.mdcrd not showing image visualization. only this I am
> getting.not other two output why ?
> 03_Prod.out
> <http://ambermd.org/tutorials/basic/tutorial0/include/03_Prod.out>
> 03_Prod.rst
> <http://ambermd.org/tutorials/basic/tutorial0/include/03_Prod.rst>
> 03_Prod.mdcrd
> <http://ambermd.org/tutorials/basic/tutorial0/include/03_Prod.mdcrd.gz>
> _______________________________________________
> AMBER mailing list
> AMBER.ambermd.org
> http://lists.ambermd.org/mailman/listinfo/amber
> 


-- 
Best wishes
Chetna
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Received on Fri Nov 16 2018 - 09:00:03 PST
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