Re: [AMBER] regarding creation of production MD output

From: Charu Sharma (JRF) <"Charu>
Date: Fri, 16 Nov 2018 22:18:52 +0530

the files when i upload it ultimately removed and wants again uploading why?

On Fri, Nov 16, 2018 at 10:17 PM Charu Sharma (JRF) <
charu.sharma.lnmiit.ac.in> wrote:

> Respected Mam,
> I am getting this not the image that is require n?
>
> On Fri, Nov 16, 2018 at 10:10 PM Chetna Tyagi <cheta231.gmail.com> wrote:
>
>> Hi Charu,
>>
>> You should not attempt to open .mdcrd or .nc files using a text editor or
>> your terminal.
>>
>> Load your topology file (.prmtop) and the Prod.mdcrd in a program like VMD
>> (Visual Molecular Dynamics). http://www.ks.uiuc.edu/Research/vmd/
>>
>> Good luck!
>>
>> On Fri, Nov 16, 2018 at 5:33 PM Charu Sharma (JRF) <
>> charu.sharma.lnmiit.ac.in> wrote:
>>
>> > Dear all ,
>> > I m encountering the problem of running in MD output files,i got the
>> below
>> > result after running according to tutorials .out of three files I am
>> > getting the only one file The production MD output is in which i am
>> geeting
>> > the output of 03_prod.out not last two one ?what is the region due to
>> this
>> > my file 03_prod.mdcrd not showing image visualization. only this I am
>> > getting.not other two output why ?
>> > 03_Prod.out
>> > <http://ambermd.org/tutorials/basic/tutorial0/include/03_Prod.out>
>> > 03_Prod.rst
>> > <http://ambermd.org/tutorials/basic/tutorial0/include/03_Prod.rst>
>> > 03_Prod.mdcrd
>> > <http://ambermd.org/tutorials/basic/tutorial0/include/03_Prod.mdcrd.gz>
>> > _______________________________________________
>> > AMBER mailing list
>> > AMBER.ambermd.org
>> > http://lists.ambermd.org/mailman/listinfo/amber
>> >
>>
>>
>> --
>> Best wishes
>> Chetna
>> _______________________________________________
>> AMBER mailing list
>> AMBER.ambermd.org
>> http://lists.ambermd.org/mailman/listinfo/amber
>>
>
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Received on Fri Nov 16 2018 - 09:00:04 PST
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