Dear Amber Users,
I would like to discuss about the effects of implicit solvents for the
folding simulation. I used the implicit Generalised Born solvent for the
linear structure of amphipilic peptides based on the sequence. I simulated
100 ns, and I was formed alpha helical structure. Experimentally, it shows
random coil structure in the water.
What do you think? please advice me.
Best regards,
Mijiddorj
_______________________________________________
AMBER mailing list
AMBER.ambermd.org
http://lists.ambermd.org/mailman/listinfo/amber
Received on Mon Nov 05 2018 - 19:30:03 PST
