Amber Archive Dec 2015: by date

Monday, 30 November 2015
- [AMBER] mac hangs when compile ambertools15 on El capitan Yong Yao
- Re: [AMBER] Not matching test AMBER14 with CUDA Mijiddorj Batsaikhan
- Re: [AMBER] mac hangs when compile ambertools15 on El capitan Yong Yao
- [AMBER] How to run two single-card jobs on the node with two GPU cards Stephen Wang
- Re: [AMBER] How to run two single-card jobs on the node with two GPU cards Kenneth Huang
- [AMBER] Utilizing two different nodes simultaneously for one job muhammad tahir ayub
- [AMBER] Docking before MD of scratch ligands OR not muhammad tahir ayub
- Re: [AMBER] zinc ordination 2-CYM 2-HID || CYM-CYM covalent bond V. Kumar
- Re: [AMBER] zinc ordination 2-CYM 2-HID || CYM-CYM covalent bond V. Kumar
Tuesday, 1 December 2015
- Re: [AMBER] Error message while running alanine dipeptide tutorial (minimization) Nikolay N. Kuzmich
- Re: [AMBER] Error message while running alanine dipeptide tutorial (minimization) Nikolay N. Kuzmich
- Re: [AMBER] Error message while running alanine dipeptide tutorial (minimization) Bill
- [AMBER] mmgbsa_CalcError Atila Petrosian
- Re: [AMBER] Not matching test AMBER14 with CUDA Jason Swails
- Re: [AMBER] mac hangs when compile ambertools15 on El capitan Jason Swails
- Re: [AMBER] Utilizing two different nodes simultaneously for one job Jason Swails
- Re: [AMBER] Docking before MD of scratch ligands OR not Jason Swails
- Re: [AMBER] mmgbsa_CalcError Jason Swails
- [AMBER] malloc error during MM-PBSA calculation on AMBER14 ... mmpbsa_py_energy: malloc.c:2372: sysmalloc Mijiddorj Batsaikhan
- Re: [AMBER] malloc error during MM-PBSA calculation on AMBER14 ... mmpbsa_py_energy: malloc.c:2372: sysmalloc Jason Swails
- Re: [AMBER] mmgbsa_CalcError Atila Petrosian
- Re: [AMBER] mmgbsa_CalcError Jason Swails
- [AMBER] [Amber] nmode() results with imaginary frequencies Guqin Shi
- [AMBER] How does the collision frequency gamma_ln value affect the temperature in Langevin dynamics jfliu
- [AMBER] Can I use the Nose-Hoover thermostat in Amber jfliu
- Re: [AMBER] Can I use the Nose-Hoover thermostat in Amber Jason Swails
- Re: [AMBER] [Amber] nmode() results with imaginary frequencies Jason Swails
- [AMBER] bug or not bug ???? Min Li
- Re: [AMBER] mac hangs when compile ambertools15 on El capitan Yong Yao
Wednesday, 2 December 2015
- [AMBER] Principal Component Analysis Beale, John
- [AMBER] kinetic Ziba Bahadori
- Re: [AMBER] mac hangs when compile ambertools15 on El capitan Jason Swails
- Re: [AMBER] free energy of solvation of small molecules Fabian gmail
- Re: [AMBER] kinetic Jason Swails
- Re: [AMBER] free energy of solvation of small molecules Jason Swails
- Re: [AMBER] Principal Component Analysis Jason Swails
- [AMBER] pH-REMD GPU runs Arjun Sharma
- [AMBER] High PB deltaG values from MMPBSA.py calculation anu chandra
- Re: [AMBER] pH-REMD GPU runs Adrian Roitberg
- Re: [AMBER] How does the collision frequency gamma_ln value affect the temperature in Langevin dynamics David A Case
- Re: [AMBER] kinetic David A Case
- Re: [AMBER] [Amber] nmode() results with imaginary frequencies Guqin Shi
- Re: [AMBER] pH-REMD GPU runs Jason Swails
- Re: [AMBER] High PB deltaG values from MMPBSA.py calculation Jason Swails
- Re: [AMBER] High PB deltaG values from MMPBSA.py calculation anu chandra
- Re: [AMBER] free energy of solvation of small molecules Fabian gmail
- Re: [AMBER] free energy of solvation of small molecules Fabian gmail
- Re: [AMBER] Principal Component Analysis Daniel Roe
- [AMBER] Amber calculated structure(PDB) visualization in pymol vs chimera V. Kumar
- Re: [AMBER] Amber calculated structure(PDB) visualization in pymol vs chimera Carlos Simmerling
- Re: [AMBER] Amber calculated structure(PDB) visualization in pymol vs chimera Daniel Roe
- Re: [AMBER] Amber calculated structure(PDB) visualization in pymol vs chimera V. Kumar
- Re: [AMBER] Amber calculated structure(PDB) visualization in pymol vs chimera V. Kumar
- Re: [AMBER] High PB deltaG values from MMPBSA.py calculation Ray Luo, Ph.D.
- [AMBER] bond connections mohammad r
- Re: [AMBER] bond connections Bill
Thursday, 3 December 2015
- Re: [AMBER] High PB deltaG values from MMPBSA.py calculation anu chandra
- Re: [AMBER] free energy of solvation of small molecules Hannes Loeffler
- [AMBER] AMBER 12 XLEAP options were disabled V. Kumar
- Re: [AMBER] free energy of solvation of small molecules Hannes Loeffler
- [AMBER] Simulation of the docked complex with phosphorylated tyrosine Pallavi Mohanty
- Re: [AMBER] free energy of solvation of small molecules Fabian gmail
- Re: [AMBER] bond connections mohammad r
- [AMBER] xleap terminal terminate Ayesha Kanwal
- Re: [AMBER] AMBER 12 XLEAP options were disabled Jason Swails
- Re: [AMBER] bond connections Jason Swails
- Re: [AMBER] xleap terminal terminate Jason Swails
- Re: [AMBER] bond connections David A Case
- Re: [AMBER] AMBER 12 XLEAP options were disabled David A Case
- Re: [AMBER] Simulation of the docked complex with phosphorylated tyrosine David A Case
- Re: [AMBER] AMBER 12 XLEAP options were disabled V. Kumar
- [AMBER] pmemd.cuda with CoM restraints 達南杰
- Re: [AMBER] pmemd.cuda with CoM restraints Charles Lin
- Re: [AMBER] pmemd.cuda with CoM restraints Marc van der Kamp
- Re: [AMBER] bond connections Jason Swails
- Re: [AMBER] bond connections Brian Radak
- Re: [AMBER] High PB deltaG values from MMPBSA.py calculation Ray Luo, Ph.D.
- [AMBER] QM/MM Implementation Details Jim William Snyder Jr
- Re: [AMBER] bond connections mohammad r
- Re: [AMBER] bond connections Jason Swails
- [AMBER] problem with "closest" waters being wrapped Kalenkiewicz, Andrew (NIH/NICHD) [F]
- Re: [AMBER] problem with "closest" waters being wrapped Daniel Roe
- Re: [AMBER] problem with "closest" waters being wrapped Kalenkiewicz, Andrew (NIH/NICHD) [F]
- Re: [AMBER] problem with "closest" waters being wrapped Marc van der Kamp
- Re: [AMBER] problem with "closest" waters being wrapped Thomas Cheatham
- [AMBER] Question Regarding Input File Preparation Ziheng Wang
- Re: [AMBER] pmemd.cuda with CoM restraints 達南杰
- Re: [AMBER] pmemd.cuda with CoM restraints Charles Lin
Friday, 4 December 2015
- Re: [AMBER] xleap terminal terminate Ayesha Kanwal
- Re: [AMBER] Error message while running alanine dipeptide tutorial (minimization) Nikolay N. Kuzmich
- Re: [AMBER] Error message while running alanine dipeptide tutorial (minimization) Bill
- Re: [AMBER] Simulation of the docked complex with phosphorylated tyrosine Pallavi Mohanty
- Re: [AMBER] free energy of solvation of small molecules Hannes Loeffler
- Re: [AMBER] xleap terminal terminate Mary Dutta
- Re: [AMBER] free energy of solvation of small molecules Fabian Glaser
- Re: [AMBER] xleap terminal terminate Jason Swails
- Re: [AMBER] Question Regarding Input File Preparation Jason Swails
- Re: [AMBER] Question Regarding Input File Preparation David A Case
- Re: [AMBER] Error message while running alanine dipeptide tutorial (minimization) David A Case
- Re: [AMBER] free energy of solvation of small molecules Hannes Loeffler
- Re: [AMBER] kinetic Andrea Spitaleri
Thursday, 3 December 2015
- Re: [AMBER] bond connections Jason Swails
Friday, 4 December 2015
- Re: [AMBER] free energy of solvation of small molecules Fabian Glaser
Saturday, 5 December 2015
- Re: [AMBER] High PB deltaG values from MMPBSA.py calculation anu chandra
- [AMBER] Add charges to new molecule with out Gaussian package V. Kumar
- Re: [AMBER] Add charges to new molecule with out Gaussian package Karl Kirschner
- [AMBER] per-residue or pairwise per-residue basis in decomposing the free energy contributions to the binding free energy Andrew Bostick
- Re: [AMBER] Add charges to new molecule with out Gaussian package V. Kumar
- Re: [AMBER] bond connections Jason Swails
- Re: [AMBER] per-residue or pairwise per-residue basis in decomposing the free energy contributions to the binding free energy Jason Swails
Sunday, 6 December 2015
- Re: [AMBER] bond connections Jonathan Sheehan
- Re: [AMBER] bond connections mohammad r
- Re: [AMBER] bond connections Bill
- Re: [AMBER] bond connections Jason Swails
- [AMBER] standard deviation of Hbond lengths and angles Hadeer ELHabashy
- [AMBER] per-residue or pairwise per-residue basis in decomposing the free energy contributions to the binding free energy Andrew Bostick
- Re: [AMBER] [Amber] nmode() results with imaginary frequencies Guqin Shi
- Re: [AMBER] per-residue or pairwise per-residue basis in decomposing the free energy contributions to the binding free energy Jason Swails
- Re: [AMBER] bond connections mohammad r
- Re: [AMBER] bond connections Jason Swails
- [AMBER] rmsd as order parameter in umbrella sampling Srinivasaraghavan Kannan
Monday, 7 December 2015
- Re: [AMBER] bond connections mohammad r
- [AMBER] cpptraj: grid and gist Thomas Fox
- Re: [AMBER] rmsd as order parameter in umbrella sampling Carlos Simmerling
- [AMBER] weird output of SMD simulation combined with Constant pH zhonghe xu
- Re: [AMBER] weird output of SMD simulation combined with Constant pH Jason Swails
- Re: [AMBER] free energy of solvation of small molecules Fabian gmail
- Re: [AMBER] free energy of solvation of small molecules David A Case
- Re: [AMBER] cpptraj: grid and gist Daniel Roe
- Re: [AMBER] standard deviation of Hbond lengths and angles Daniel Roe
- Re: [AMBER] cpptraj: grid and gist Steven Ramsey
- [AMBER] External forces Jack Shepherd
- [AMBER] MMPBSA bad atom type error persisting Kenneth Huang
- Re: [AMBER] weird output of SMD simulation combined with Constant pH Gustavo Seabra
- Re: [AMBER] weird output of SMD simulation combined with Constant pH Jason Swails
- Re: [AMBER] standard deviation of Hbond lengths and angles Hai Nguyen
- Re: [AMBER] free energy of solvation of small molecules Fabian Glaser
- Re: [AMBER] weird output of SMD simulation combined with Constant pH Gustavo Seabra
- Re: [AMBER] weird output of SMD simulation combined with Constant pH Jason Swails
Tuesday, 8 December 2015
- Re: [AMBER] External forces Josh Berryman
- Re: [AMBER] cpptraj: grid and gist Thomas Fox
- Re: [AMBER] cpptraj: grid and gist Jason Swails
- Re: [AMBER] xparmed.py Nathalie Willems
- Re: [AMBER] External forces Christina Bergonzo
- Re: [AMBER] xparmed.py Jason Swails
- Re: [AMBER] xparmed.py Nathalie Willems
- Re: [AMBER] cpptraj: grid and gist Thomas Fox
- Re: [AMBER] xparmed.py Jason Swails
- [AMBER] Amber 14, sander.MPI, NaN Starovoytov, Oleg
- [AMBER] problem with hist command in cpptraj in AmberTools15 Osman, Roman
- Re: [AMBER] problem with hist command in cpptraj in AmberTools15 Daniel Roe
- [AMBER] [Amber] Imaginary Frequencies from nmode() Guqin Shi
- Re: [AMBER] problem with hist command in cpptraj in AmberTools15 Osman, Roman
- Re: [AMBER] problem with hist command in cpptraj in AmberTools15 Daniel Roe
- Re: [AMBER] problem with hist command in cpptraj in AmberTools15 Osman, Roman
- [AMBER] Problem with GPU equilibration step [ cudaMalloc GpuBuffer::Allocate failed out of memory] Yogeeshwar Ajjugal
Wednesday, 9 December 2015
- Re: [AMBER] Problem with GPU equilibration step [ cudaMalloc GpuBuffer::Allocate failed out of memory] Jason Swails
- Re: [AMBER] FW: FW: How to use "divergence" command Mahendra B Thapa
- Re: [AMBER] FW: FW: How to use "divergence" command Jason Swails
- [AMBER] Charmm-gui conversion mohammad r
- Re: [AMBER] Charmm-gui conversion Brian Radak
- Re: [AMBER] FW: FW: How to use "divergence" command Daniel Roe
- [AMBER] OSX 10.11.1: Amber installation problem George Tzotzos
- Re: [AMBER] Charmm-gui conversion Arnoult, Eric [JRDUS]
- Re: [AMBER] Charmm-gui conversion mohammad r
- Re: [AMBER] Charmm-gui conversion Bill Ross
- Re: [AMBER] Charmm-gui conversion Arnoult, Eric [JRDUS]
- Re: [AMBER] Charmm-gui conversion mohammad r
- Re: [AMBER] OSX 10.11.1: Amber installation problem Jason Swails
- Re: [AMBER] Charmm-gui conversion Bill Ross
- Re: [AMBER] Charmm-gui conversion Brian Radak
- Re: [AMBER] Problem with GPU equilibration step [ cudaMalloc GpuBuffer::Allocate failed out of memory] Yogeeshwar Ajjugal
Thursday, 10 December 2015
- Re: [AMBER] OSX 10.11.1: Amber installation problem George Tzotzos
- Re: [AMBER] zinc ordination 2-CYM 2-HID || CYM-CYM covalent bond V. Kumar
- Re: [AMBER] zinc ordination 2-CYM 2-HID || CYM-CYM covalent bond Carlos Simmerling
- Re: [AMBER] Charmm-gui conversion mohammad r
- Re: [AMBER] Charmm-gui conversion Bill Ross
- Re: [AMBER] zinc ordination 2-CYM 2-HID || CYM-CYM covalent bond V. Kumar
- Re: [AMBER] Charmm-gui conversion mohammad r
- Re: [AMBER] Charmm-gui conversion Brian Radak
- Re: [AMBER] Charmm-gui conversion mohammad r
- Re: [AMBER] Charmm-gui conversion mohammad r
- Re: [AMBER] Charmm-gui conversion David A Case
- [AMBER] gnu plot of cpptraj Secstruct George Tzotzos
- Re: [AMBER] gnu plot of cpptraj Secstruct Lachele Foley
- Re: [AMBER] Charmm-gui conversion mohammad r
Friday, 11 December 2015
- Re: [AMBER] Charmm-gui conversion Bill Ross
- [AMBER] ligand is not opening in the binding site of protein muhammad tahir ayub
- Re: [AMBER] ligand is not opening in the binding site of protein Bill Ross
- Re: [AMBER] Charmm-gui conversion Jason Swails
- Re: [AMBER] gnu plot of cpptraj Secstruct George Tzotzos
- Re: [AMBER] Charmm-gui conversion Jason Swails
- Re: [AMBER] gnu plot of cpptraj Secstruct Jason Swails
- Re: [AMBER] gnu plot of cpptraj Secstruct George Tzotzos
- [AMBER] WARNING: There is a bond of 420.000806 angstroms between: ------- .R<LIG 546>.A<O2 28> and .R<LIG 546>.A<H2 31> Andrew Bostick
- Re: [AMBER] Charmm-gui conversion mohammad r
- Re: [AMBER] WARNING: There is a bond of 420.000806 angstroms between: ------- .R<LIG 546>.A<O2 28> and .R<LIG 546>.A<H2 31> Carlos Simmerling
- Re: [AMBER] gnu plot of cpptraj Secstruct Daniel Roe
- Re: [AMBER] gnu plot of cpptraj Secstruct George Tzotzos
- Re: [AMBER] gnu plot of cpptraj Secstruct Lachele Foley
- Re: [AMBER] gnu plot of cpptraj Secstruct George Tzotzos
- [AMBER] Problem with initial complex structure for TI Kalenkiewicz, Andrew (NIH/NICHD) [F]
- Re: [AMBER] zinc ordination 2-CYM 2-HID || CYM-CYM covalent bond Pengfei Li
Saturday, 12 December 2015
- Re: [AMBER] zinc ordination 2-CYM 2-HID || CYM-CYM covalent bond V. Kumar
- Re: [AMBER] Amber 14, sander.MPI, NaN David A Case
- Re: [AMBER] [Amber] Imaginary Frequencies from nmode() David A Case
Sunday, 13 December 2015
- [AMBER] problem in adding ACE and NME to CSX. Saman Yousuf ali
- Re: [AMBER] free energy of solvation of small molecules Fabian gmail
- Re: [AMBER] problem in adding ACE and NME to CSX. Jason Swails
- [AMBER] RED vIII for Amber Nash, Anthony
- [AMBER] Time Step Wong Li Zhe
- Re: [AMBER] Problems regarding using ZAFF Bill Ross
- Re: [AMBER] Time Step Bill Ross
- Re: [AMBER] RED vIII for Amber Karl Kirschner
- Re: [AMBER] RED vIII for Amber Nash, Anthony
Monday, 14 December 2015
- Re: [AMBER] free energy of solvation of small molecules Hannes Loeffler
- [AMBER] restraints on group of atoms Dhananjay
- Re: [AMBER] restraints on group of atoms David A Case
- [AMBER] HBOND_water mediated Lara rajam
- Re: [AMBER] cpptraj grid command Thomas Fox
- Re: [AMBER] Time Step Jason Swails
- [AMBER] MMPBSA.py.MPI compling issue Marc Zhang
- [AMBER] charge fitting procedure in amber conor parks
- Re: [AMBER] Problem with initial complex structure for TI Kalenkiewicz, Andrew (NIH/NICHD) [F]
- [AMBER] Time Step Wong Li Zhe
- [AMBER] Irregular ligand positioning in simulations Anasuya Dighe
- [AMBER] problem in plotting secondary structure graph Sehrish Naz
- [AMBER] confusion in xleap for ligand and comlex Ayesha Kanwal
Tuesday, 15 December 2015
- Re: [AMBER] charge fitting procedure in amber Karl Kirschner
- Re: [AMBER] charge fitting procedure in amber Karl Kirschner
- Re: [AMBER] Irregular ligand positioning in simulations Carlos Simmerling
- Re: [AMBER] confusion in xleap for ligand and comlex David A Case
- [AMBER] mbar Johannes Loeffler
- Re: [AMBER] mbar Hannes Loeffler
- Re: [AMBER] mbar Johannes Loeffler
- Re: [AMBER] mbar Hannes Loeffler
- Re: [AMBER] mbar Johannes Loeffler
- Re: [AMBER] mbar Brian Radak
- Re: [AMBER] problem in plotting secondary structure graph Daniel Roe
- Re: [AMBER] mbar Hannes Loeffler
- Re: [AMBER] Irregular ligand positioning in simulations Daniel Roe
- Re: [AMBER] mbar Johannes Löffler
- Re: [AMBER] MMPBSA.py.MPI compling issue Daniel Roe
- Re: [AMBER] HBOND_water mediated Daniel Roe
- Re: [AMBER] mbar Hannes Loeffler
- Re: [AMBER] [Amber] Imaginary Frequencies from nmode() Guqin Shi
- [AMBER] Warning regarding "triangular bond" Xiong Jiawei
Wednesday, 16 December 2015
- Re: [AMBER] Warning regarding "triangular bond" David A Case
- [AMBER] Ligand's parameterization Trang Nguyen
- Re: [AMBER] Ligand's parameterization Carlos Simmerling
- Re: [AMBER] Ligand's parameterization Mathy Froeyen
- [AMBER] Minimization after simulated annealing (0° C) ans CSH script need to be combined V. Kumar
- Re: [AMBER] Warning regarding "triangular bond" Bill Ross
Thursday, 17 December 2015
- [AMBER] cpptraj average structure warning George Tzotzos
- [AMBER] Termodinamic Integration setup error Claire Coderch Boué
- Re: [AMBER] Termodinamic Integration setup error Hannes Loeffler
- Re: [AMBER] cpptraj average structure warning George Tzotzos
- Re: [AMBER] Ligand's parameterization Karl Kirschner
- [AMBER] Water model jfliu
- [AMBER] How to have special residues in trajectory file using cpptraj shahab shariati
- Re: [AMBER] How to have special residues in trajectory file using cpptraj Kenneth Huang
- Re: [AMBER] HBOND_water mediated Lara rajam
- Re: [AMBER] How to have special residues in trajectory file using cpptraj Daniel Roe
- [AMBER] Confusion on "No Pressure" Robert Molt
- Re: [AMBER] Confusion on "No Pressure" Jason Swails
- [AMBER] Is triplicate analysis required for pmemd.MPI and ig=-1? Morrow,John Kenneth
- [AMBER] average structure Andrew Bostick
- Re: [AMBER] average structure Hai Nguyen
- Re: [AMBER] average structure Ross Walker
- Re: [AMBER] Is triplicate analysis required for pmemd.MPI and ig=-1? Ross Walker
Friday, 18 December 2015
- Re: [AMBER] Water model David A Case
Saturday, 19 December 2015
- Re: [AMBER] bug or not bug ???? Åke Sandgren
Sunday, 20 December 2015
- [AMBER] How to calculate the interplanar angle between 2 Trp residues? Yew Mun Yip
- [AMBER] TIP3 simulated annealing, 200ps*50 loops = 10ns ==> Minimization of lower energy structures V. Kumar
- Re: [AMBER] TIP3 simulated annealing, 200ps*50 loops = 10ns ==> Minimization of lower energy structures Carlos Simmerling
- Re: [AMBER] TIP3 simulated annealing, 200ps*50 loops = 10ns ==> Minimization of lower energy structures V. Kumar
- Re: [AMBER] TIP3 simulated annealing, 200ps*50 loops = 10ns ==> Minimization of lower energy structures Carlos Simmerling
- Re: [AMBER] TIP3 simulated annealing, 200ps*50 loops = 10ns ==> Minimization of lower energy structures V. Kumar
- Re: [AMBER] bug or not bug ???? David A Case
- Re: [AMBER] RED vIII for Amber Nash, Anthony
- Re: [AMBER] RED vIII for Amber Steven M. Graham
- [AMBER] GPU support Rupak Pal
Monday, 21 December 2015
- [AMBER] pmemd issue Mahmoud A. A. Ibrahim
- [AMBER] ig=-1 for multi production runs Fabian gmail
- Re: [AMBER] pmemd issue Jason Swails
- Re: [AMBER] ig=-1 for multi production runs Jason Swails
- Re: [AMBER] pmemd issue David A Case
- Re: [AMBER] ig=-1 for multi production runs David A Case
- Re: [AMBER] ig=-1 for multi production runs Fabian gmail
- Re: [AMBER] ig=-1 for multi production runs Jason Swails
- Re: [AMBER] GPU support Ross Walker
- Re: [AMBER] How to calculate the interplanar angle between 2 Trp residues? Daniel Roe
- Re: [AMBER] GPU support Jason Swails
- [AMBER] Finding PDF of individual dihedral angles Mahendra B Thapa
Tuesday, 22 December 2015
- Re: [AMBER] GPU support Rupak Pal
Wednesday, 23 December 2015
- [AMBER] TI/MBAR energy re-calculating with imin5 wliu
- [AMBER] MMPBSA error Lara rajam
- Re: [AMBER] MMPBSA error Jason Swails
Sunday, 27 December 2015
- [AMBER] A problem about using AMBER 东不拉
Monday, 28 December 2015
- [AMBER] MD study of transition of protein from one conformation to another Abhilash J
- Re: [AMBER] MD study of transition of protein from one conformation to another David A Case
- [AMBER] Group specification Havva Mehralitabar
- Re: [AMBER] MD study of transition of protein from one conformation to another Abhilash J
Tuesday, 29 December 2015
- Re: [AMBER] Group specification David A Case
- [AMBER] different dielectric constant value for polar non-polar hydrophobic residue in MMGBSA bharat lakhani
Wednesday, 30 December 2015
- Re: [AMBER] different dielectric constant value for polar non-polar hydrophobic residue in MMGBSA David A Case
- [AMBER] which chain to select for MD simulation. Saman Yousuf ali
- Re: [AMBER] which chain to select for MD simulation. Jason Swails
- [AMBER] Problem in interpreting snapshot_statistics.out after per-residue decomposition analysis Soong Jiaxin
Thursday, 31 December 2015
- [AMBER] Error in running AMBER 12 GPU simulations Yogeeshwar Ajjugal
- Re: [AMBER] Error in running AMBER 12 GPU simulations David A Case

Last message date: Thu Dec 31 2015 - 08:30:03 PST
Archived on: Fri Apr 26 2024 - 05:55:20 PDT

Amber Archive Dec 2015 by date