Re: [AMBER] average structure

From: Hai Nguyen <nhai.qn.gmail.com>
Date: Thu, 17 Dec 2015 17:43:59 -0500

you can specify `start, stop`

trajin your_traj.nc start stop
average test.pdb pdb

(replace start, stop by your start and end frame indices)

Hai

On Thu, Dec 17, 2015 at 5:35 PM, Andrew Bostick <andrew.bostick1.gmail.com>
wrote:

> Dear all,
>
> I did 20 ns MD simulation on my system (protein-ligand complex).
>
>
> I want to have the average structure of the protein-ligand complex from the
> last 5 ns of MD trajectory.
>
>
> How to do that?
>
>
> Any help will highly appreciated.
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>
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Received on Thu Dec 17 2015 - 15:00:04 PST
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