you can specify `start, stop`
trajin your_traj.nc start stop
average test.pdb pdb
(replace start, stop by your start and end frame indices)
Hai
On Thu, Dec 17, 2015 at 5:35 PM, Andrew Bostick <andrew.bostick1.gmail.com>
wrote:
> Dear all,
>
> I did 20 ns MD simulation on my system (protein-ligand complex).
>
>
> I want to have the average structure of the protein-ligand complex from the
> last 5 ns of MD trajectory.
>
>
> How to do that?
>
>
> Any help will highly appreciated.
> _______________________________________________
> AMBER mailing list
> AMBER.ambermd.org
> http://lists.ambermd.org/mailman/listinfo/amber
>
_______________________________________________
AMBER mailing list
AMBER.ambermd.org
http://lists.ambermd.org/mailman/listinfo/amber
Received on Thu Dec 17 2015 - 15:00:04 PST
