Amber Archive Dec 2015 by messages with attachments

311 messages: Starting Mon Nov 30 2015 - 19:30:03 PST, Ending Thu Dec 31 2015 - 08:30:03 PST
This period: Most recent messages
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Re: [AMBER] Not matching test AMBER14 with CUDA Mijiddorj Batsaikhan (Mon Nov 30 2015 - 20:20:13 PST)
1. 11-30_00-22-03.log (37640 bytes)
Re: [AMBER] [Amber] nmode() results with imaginary frequencies Guqin Shi (Wed Dec 02 2015 - 06:15:58 PST)
1. complex_BAZ_mode1_nmode.2.out (310861 bytes)
Re: [AMBER] bond connections mohammad r (Thu Dec 03 2015 - 11:27:51 PST)
1. Capture.PNG (6063 bytes)
[AMBER] Question Regarding Input File Preparation Ziheng Wang (Thu Dec 03 2015 - 18:35:49 PST)
1. receptor.mol2 (511720 bytes)
Re: [AMBER] Question Regarding Input File Preparation Jason Swails (Fri Dec 04 2015 - 04:29:44 PST)
1. receptor.pdb (163546 bytes)
Re: [AMBER] bond connections Jason Swails (Thu Dec 03 2015 - 20:39:04 PST)
1. snapshot.jpg (2529918 bytes)
Re: [AMBER] bond connections Jonathan Sheehan (Sun Dec 06 2015 - 00:41:34 PST)
1. snapshot_fixed.jpg (150575 bytes)
[AMBER] weird output of SMD simulation combined with Constant pH zhonghe xu (Mon Dec 07 2015 - 06:25:27 PST)
1. SMD_pH.JPG (308037 bytes)
Re: [AMBER] zinc ordination 2-CYM 2-HID || CYM-CYM covalent bond V. Kumar (Thu Dec 10 2015 - 08:05:43 PST)
1. zinc_cordination2.png (122016 bytes)
2. TIP3_ZN.png (111444 bytes)
[AMBER] Ligand's parameterization Trang Nguyen (Wed Dec 16 2015 - 06:07:55 PST)
1. aligment.png (143897 bytes)
2. pep.frcmod (651 bytes)
3. pep.log (2462 bytes)
4. pep.pdb (822 bytes)
Re: [AMBER] Ligand's parameterization Mathy Froeyen (Wed Dec 16 2015 - 06:47:50 PST)
1. Run.respx (3239 bytes)
Re: [AMBER] Ligand's parameterization Karl Kirschner (Thu Dec 17 2015 - 04:02:27 PST)
1. data.png (182546 bytes)
[AMBER] Is triplicate analysis required for pmemd.MPI and ig=-1? Morrow,John Kenneth (Thu Dec 17 2015 - 14:25:51 PST)
1. 3runs.backboneRMSD_32ns.png (30796 bytes)
[AMBER] Problem in interpreting snapshot_statistics.out after per-residue decomposition analysis Soong Jiaxin (Wed Dec 30 2015 - 19:36:54 PST)
1. 12-31_11:29:54.png (112885 bytes)