Here I attached my last log file.
my cofiguration line and last several lines are here:
*./configure -cuda_DPFP gnu*
######
If you have not already done so, you may need to add /usr/local/cuda-7.5/lib
and/or /usr/local/cuda-7.5/lib64 to LD_LIBRARY_PATH using the command
export LD_LIBRARY_PATH="/usr/local/cuda-7.5/lib:${LD_LIBRARY_PATH}"
(bash, sh)
setenv LD_LIBRARY_PATH "/usr/local/cuda-7.5/lib:${LD_LIBRARY_PATH}"
(tcsh, csh)
--------------------------------------------------------------------------------
The next step is to type 'make install'
Cleaning the src directories. This may take a few moments.
Configure complete.
######
then
*export LD_LIBRARY_PATH="/usr/local/cuda-7.5/lib:${LD_LIBRARY_PATH}"*
*make install*
last rows of installation
#####
./cuda/cuda.a -L/usr/local/cuda-7.5/lib64 -L/usr/local/cuda-7.5/lib
-lcurand -lcufft -lcudart -lstdc++ -L/home/mijiddorj/installs/amber14/lib
/home/mijiddorj/installs/amber14/lib/libnetcdff.a
/home/mijiddorj/installs/amber14/lib/libnetcdf.a
/home/mijiddorj/installs/amber14/lib/libemil.a -lstdc++
make[3]: Leaving directory `/home/mijiddorj/installs/amber14/src/pmemd/src'
Installation of pmemd.cuda complete
make[2]: Leaving directory `/home/mijiddorj/installs/amber14/src/pmemd'
make[1]: Leaving directory `/home/mijiddorj/installs/amber14/src'
#####
Finally,
*make test*
results same as following lines
....
./Run.cellulose_nvt: Program error
make[3]: [test.pmemd.cuda.pme.big] Error 1 (ignored)
cd cellulose/ && ./Run.cellulose_npt SPFP
/home/mijiddorj/installs/amber14/include/netcdf.mod
../../../bin/pmemd.cuda_SPFP: error while loading shared libraries:
libcurand.so.7.5: cannot open shared object file: No such file or directory
./Run.cellulose_npt: Program error
make[3]: [test.pmemd.cuda.pme.big] Error 1 (ignored)
make[3]: Leaving directory `/home/mijiddorj/installs/amber14/test/cuda'
make[2]: Leaving directory `/home/mijiddorj/installs/amber14/test'
0 file comparisons passed
0 file comparisons failed
327 tests experienced errors
Test log file saved as
/home/mijiddorj/installs/amber14/logs/test_amber_cuda/2015-11-30_23-15-10.log
No test diffs to save!
make[1]: Leaving directory `/home/mijiddorj/installs/amber14/test'
Mijiddorj
On Mon, Nov 30, 2015 at 1:52 PM, Ross Walker <rosscwalker.gmail.com> wrote:
> Hi Mijiddorj,
>
> Did you see any messages in the terminal when you ran the tests?
>
> What were the commands you ran to compile things and run the tests? - What
> does the log file that is referenced contain?
>
> I suspect that the compilation did not complete correctly and you likely
> got an error message at that stage. The errors you see in the test are
> likely due to the executable not being found since it failed to compile.
> Either way to help more we will need additional information.
>
> All the best
> Ross
>
> > On Nov 29, 2015, at 21:22, Mijiddorj Batsaikhan <b.mijiddorj.gmail.com>
> wrote:
> >
> > Dear all,
> >
> > I installed amber14 and ambertools15 with cuda. When I tested, I had got
> > following message:
> >
> > How to fix it?
> >
> > *********************************
> > 0 file comparisons passed
> > 0 file comparisons failed
> > 327 tests experienced errors
> > Test log file saved as
> >
> /home/mijiddorj/installs/amber14/logs/test_amber_cuda/2015-11-30_00-22-03.log
> > No test diffs to save!
> > make[1]: Leaving directory `/home/mijiddorj/installs/amber14/test'
> > *********************************
> >
> > Best regards,
> >
> > Mijiddorj
> > _______________________________________________
> > AMBER mailing list
> > AMBER.ambermd.org
> > http://lists.ambermd.org/mailman/listinfo/amber
>
>
> _______________________________________________
> AMBER mailing list
> AMBER.ambermd.org
> http://lists.ambermd.org/mailman/listinfo/amber
>
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Received on Mon Nov 30 2015 - 20:30:03 PST
