Thank you Jonathan,
In vmd when I load both the top and crd files with Amber 7 restart, it shows nothing. Indeed when loading the topology file the number of atoms and frames are zero but when I load the crd file the number of atoms and frames changed.
On Sunday, December 6, 2015 12:11 PM, Jonathan Sheehan <jonathan.sheehan.gmail.com> wrote:
> On Sat, Dec 5, 2015 at 1:19 AM, mohammad r <mohammad.r0325.yahoo.com> wrote:
>> Thank you Jason,
>>
>> Unfortunately I cannot open the image you've sent to me(I tried paint and
>> windows photo viewer). Can you please send it in another format?
Dear Mohammad,
Here's a fixed image of the molecule. You can see many severe
distortions. You need to go back and correct those, as Jason said.
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Received on Sun Dec 06 2015 - 01:00:06 PST
