Re: [AMBER] bond connections

From: Bill <ross.cgl.ucsf.edu>
Date: Sun, 6 Dec 2015 01:24:34 -0800

You could try cleaning this up in xleap, by selecting groups of atoms to
minimize step-by-step.

Bill

On 12/6/15 12:41 AM, Jonathan Sheehan wrote:
>> On Sat, Dec 5, 2015 at 1:19 AM, mohammad r <mohammad.r0325.yahoo.com> wrote:
>>> Thank you Jason,
>>>
>>> Unfortunately I cannot open the image you've sent to me(I tried paint and
>>> windows photo viewer). Can you please send it in another format?
> Dear Mohammad,
>
> Here's a fixed image of the molecule. You can see many severe
> distortions. You need to go back and correct those, as Jason said.
>
>
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Received on Sun Dec 06 2015 - 01:30:03 PST
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