Re: [AMBER] ligand is not opening in the binding site of protein

From: Bill Ross <ross.cgl.ucsf.edu>
Date: Fri, 11 Dec 2015 00:36:03 -0800

What do you mean by 'opening'? Do you want the ligand to bind from
solution? Or exit the binding site?

Bill

On 12/11/15 12:22 AM, muhammad tahir ayub wrote:
> Dear Amber Users:
> I have prepared my ligand from antechamber and made the complex but the
> problem is that ligand is not opening in the binding site of the protein, I
> have visualize the ligand it is fine
> Kindly give me some suggestions regarding this
>
> Muhammad Tahir Ayub
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> AMBER mailing list
> AMBER.ambermd.org
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Received on Fri Dec 11 2015 - 01:00:03 PST
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