[AMBER] Simulation of the docked complex with phosphorylated tyrosine

From: Pallavi Mohanty <pallavipmohanty.gmail.com>
Date: Thu, 3 Dec 2015 17:23:38 +0530

Dear Amber Users!
I have a docked complex with one the tyrosines is phosphorylated. The
phosphorylated tyrosine is interacting with some residues present in the
other chain of the complex. I have performed the docking in HADDOCK. Now I
want to simulate the complex and I am clueless what can be the possible
strategy. As in i am unable to generate the topology and coordinate files
for the complex. Moreover I thought antechamber would be the possible
answer but unfortunately it says MAXATOM limit exceeds the given input.
Please help.

Pallavi Mohanty
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Received on Thu Dec 03 2015 - 04:00:07 PST
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