Hello again,
nikolay/Tutorial% $AMBERHOME/bin/sander -O -i 01_Min.in -o 01_Min.out -p
prmtop -c inpcrd -r 01_Min.rst -inf 01_Min.mdinfo
Error opening unit 30: File "inpcrd" is missing or unreadable
Actually, the inpcrd file does exist in folder
/home/nikolay/amber14/dat/leap/prep/
and is identical to inpcrd file of this tutorial available at
http://ambermd.org/tutorials/basic/tutorial0/include/inpcrd
The input file 01_Min.in is located at
/home/nikolay/Tutorial/
and is also identical to that one from
Alanine_Dipeptide_Files.zip
<
http://ambermd.org/tutorials/basic/tutorial0/include/Alanine_Dipeptide_Tutorial_Files.zip>
archive.
So what can be a source of trouble again?
Kind regards,
Nick
2015-12-01 12:27 GMT+03:00 Nikolay N. Kuzmich <nnkuzmich.gmail.com>:
> If I add a blank line at the end of 01_Min.in file,
> another error message appears:
> nikolay/Tutorial% $AMBERHOME/bin/sander -O -i 01_Min.in -o 01_Min.out -p
> prmtop -c inpcrd -r 01_Min.rst -inf 01_Min.mdinfo
>
> Error opening unit 30: File "inpcrd" is missing or
> unreadable
> nikolay/Tutorial%
>
> Kind regards
> Nick
>
>
>
> 2015-12-01 12:08 GMT+03:00 Nikolay N. Kuzmich <nnkuzmich.gmail.com>:
>
>> you might try without a space before the &cntrl and / lines
>>
>> On Mon, Nov 30, 2015 at 6:39 AM, Nikolay N. Kuzmich <nnkuzmich.gmail.com>
>>
>> wrote:
>>
>> *> Dear Bill, David and other Amber users, *
>> *> *
>> *> I enclose a copy of the 01_Min.in file. *
>> *> How should it be formatted correctly?.. *
>> *> Also an extra blank line at the end mdread1.F90 file was added, *
>> *> but it didn't help. *
>> *> So what can be done next?.. *
>> *> I am a beginner at Amber and compiling, etc. *
>> *> so hope for your empathy. *
>> *> *
>> *> Kind regards, *
>> *> Nick *
>> *> *
>> *> 2015-11-27 11:28 GMT+03:00 Nikolay N. Kuzmich <nnkuzmich.gmail.com
>> <http://nnkuzmich.gmail.com>>: *
>> *> *
>> *> > Dear Amber users, *
>> *> > *
>> *> > When I launched minimization procedure in course of the alanine
>> dipeptide *
>> *> > tutorial *
>> *> > I have received an error message: *
>> *> > *
>> *> > linux-0bye nikolay/Tutorial# $AMBERHOME/bin/sander -O -i 01_Min.in
>> -o *
>> *> > 01_Min.out -p prmtop -c inpcrd -r 01_Min.rst -inf 01_Min.mdinfo *
>> *> > At line 668 of file mdread1.F90 (unit = 5, file = '01_Min.in') *
>> *> > Fortran runtime error: End of file *
>> *> > linux-0bye nikolay/Tutorial# *
>> *> > *
>> *> > I also have attached mdread1.F90 file which contains FATAL ERROR
>> messages *
>> *> > in it. *
>> *> > Please tell me how could I fix it. *
>> *> > *
>> *> > Kind regards, *
>>
>>
>> *> > Nick*
>> Dear Carlos,
>>
>> thanks for your advice, I have deleted these spaces
>> but the same error message appears again...
>> Is there a problem still in 01_Min.in file,
>> that is, Amber can't see the &cntrl character in it?
>>
>> Kind regards,
>> Nick
>>
>> 2015-11-30 14:39 GMT+03:00 Nikolay N. Kuzmich <nnkuzmich.gmail.com>:
>>
>>> Dear Bill, David and other Amber users,
>>>
>>> I enclose a copy of the 01_Min.in file.
>>> How should it be formatted correctly?..
>>> Also an extra blank line at the end mdread1.F90 file was added,
>>> but it didn't help.
>>> So what can be done next?..
>>> I am a beginner at Amber and compiling, etc.
>>> so hope for your empathy.
>>>
>>> Kind regards,
>>> Nick
>>>
>>> 2015-11-27 11:28 GMT+03:00 Nikolay N. Kuzmich <nnkuzmich.gmail.com>:
>>>
>>>> Dear Amber users,
>>>>
>>>> When I launched minimization procedure in course of the alanine
>>>> dipeptide tutorial
>>>> I have received an error message:
>>>>
>>>> linux-0bye nikolay/Tutorial# $AMBERHOME/bin/sander -O -i 01_Min.in -o
>>>> 01_Min.out -p prmtop -c inpcrd -r 01_Min.rst -inf 01_Min.mdinfo
>>>> At line 668 of file mdread1.F90 (unit = 5, file = '01_Min.in')
>>>> Fortran runtime error: End of file
>>>> linux-0bye nikolay/Tutorial#
>>>>
>>>> I also have attached mdread1.F90 file which contains FATAL ERROR
>>>> messages in it.
>>>> Please tell me how could I fix it.
>>>>
>>>> Kind regards,
>>>> Nick
>>>>
>>>> Nikolay Kuzmich, PhD
>>>> Department of Drug Safety
>>>> Research Institute of Influenza
>>>> WHO National Influenza Centre of Russia
>>>> 197376 Saint-Petersburg
>>>> http://www.influenza.spb.ru/en/
>>>> 15/17 Professor Popov St.
>>>> Tel.: +78124991559
>>>> Mobile: +79213491750
>>>> e-mail: nikolay.kuzmich.influenza.spb.ru
>>>> nnkuzmich.gmail.com
>>>>
>>>
>>>
>>
>
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Received on Fri Dec 04 2015 - 01:00:05 PST
