On Fri, Dec 11, 2015 at 7:22 AM, George Tzotzos <gtzotzos.me.com> wrote:
> Thank you very much for the help.
>
> The Amber list seems to have stripped my attachment. I include it in this
> email too.
>
> Secstruct produces a gnuplot script a sample of which is at the end of
> this message. The script is then run by cpptraj on the fly.
>
> I guess the problem(???) is with set ytics(“ASP:1 1.000,”THR:2”, etc).
>
> Do I have to run gnuplot outside cpptraj by removing the ytics manually
> and also changing the set yrange to [1:125] (125 is the last residue).
>
Unless you want to change the cpptraj source code to print the gnuplot
script you want, yes. But this should not be a problem. cpptraj creates
the gnuplot script for you, so all you have to do is modify that, then run:
gnuplot <script>
HTH,
Jason
--
Jason M. Swails
BioMaPS,
Rutgers University
Postdoctoral Researcher
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Received on Fri Dec 11 2015 - 06:00:06 PST
