Amber Archive Nov 2004: by date

Monday, 1 November 2004
- Re: AMBER: ptraj questions Oliver Hucke
- AMBER: Amber7 installation error on Solaris 9 Joe Nolan
- Re: AMBER: Amber7 installation error on Solaris 9 David A. Case
- AMBER: MD & folding bybaker.itsa.ucsf.edu
- Re: AMBER: MD & folding Bimo Ario Tejo
Tuesday, 2 November 2004
- AMBER: about FEP Xiao He
- AMBER: ESP fitting from Gaussian03 cube files Ye Mei
- Re: AMBER: about FEP Annette Ho
- Re: AMBER: about FEP david.evans.ulsop.ac.uk
- Re: AMBER: about FEP Annette Höglund
- Re: AMBER: about FEP david.evans.ulsop.ac.uk
- Re: AMBER: about FEP David A. Case
- Re: AMBER: about FEP Ray Luo
- AMBER: MD & folding bybaker.itsa.ucsf.edu
- Re: AMBER: MD & folding Carlos Simmerling
- AMBER: MD & folding bybaker.itsa.ucsf.edu
- AMBER: Clustering in PTRAJ Stephen.Titmuss.csiro.au
- Re: Re: AMBER: about FEP Xiao He
- AMBER: SANDER BOMB in subroutine nonbond_list Marc Perea
- AMBER: basis set Yanze Zhang
- : AMBER: basis set ying xiong
- AMBER: ESPGEN problems to read G03 output files Hernán Alonso
Wednesday, 3 November 2004
- Re: Re: AMBER: about FEP Thomas Steinbrecher
- Re: AMBER: ESPGEN problems to read G03 output files Jiten
- AMBER: FEP and charges Annette Höglund
- Re: AMBER: SANDER BOMB in subroutine nonbond_list David A. Case
- AMBER: Extracting torsional angles for specific conformation Darian, Eva
- AMBER: gaff parameter ambiguities Anthony Fejes
- AMBER: MD simulation at pH=1 Kijeong Kwac
Thursday, 4 November 2004
- AMBER: Fluctuation in temperature anshul.imtech.res.in
- AMBER: H-bonded waters selection pl
- Re: AMBER: Fluctuation in temperature Oliver Hucke
- AMBER: gaussian command line Yanze Zhang
- RE: AMBER: Fluctuation in temperature Ross Walker
- AMBER: Kara Wald
- AMBER: Re: Antechamber Kara Wald
- RE: AMBER: Re: Antechamber Ross Walker
- Re: AMBER: FEP and charges Chunhu Tan
- AMBER: ptraj problem Abd Ghani Abd Aziz
- Re: AMBER: ptraj problem Thomas E. Cheatham, III
- Re: AMBER: ptraj problem Abd Ghani Abd Aziz
- AMBER: constructing a small colecule mathew k varghese
- Re: AMBER: H-bonded waters selection Thomas E. Cheatham, III
- AMBER: translational and rotational entropy hj zou
- Re: AMBER: translational and rotational entropy Andreas Svrcek-Seiler
Friday, 5 November 2004
- Re: AMBER: constructing a small colecule david.evans.ulsop.ac.uk
- Re: AMBER: H-bonded waters selection pl
- AMBER: end point contribution in MCTI Cai, Yufeng
- AMBER: Amber7 compilation error Joe Nolan
- AMBER: Problems using mm_pbsa.perl Daniel Wetzler
- Re: AMBER: end point contribution in MCTI David A. Case
- Re: AMBER: Problems using mm_pbsa.perl Holger Gohlke
- Re: AMBER: Amber7 compilation error David A. Case
- AMBER: ptraj radial Sandro Fornili
- AMBER: Minimization failure: 1cbn Harianto
- Re: AMBER: basis set FyD
- Re: AMBER: ESPGEN problems to read G03 output files FyD
- Re: AMBER: gaussian command line FyD
- Re: AMBER: Minimization failure: 1cbn Bimo Ario Tejo
- Re: AMBER: Minimization failure: 1cbn Bill Ross
Saturday, 6 November 2004
- AMBER: where is the VDW radius? Cai, Yufeng
- Re: AMBER: where is the VDW radius? Oliver Hucke
Sunday, 7 November 2004
- AMBER: positive VDWAALS John
- Re: AMBER: positive VDWAALS Michael Crowley
Monday, 8 November 2004
- AMBER: mm_PBSA: problems calculating molecular surface for some snapshots Magne Olufsen
- AMBER: time-averaged restraints John
- Re: AMBER: Re: Antechamber Kara Wald
- AMBER: amber 7 nmode on osx Knut Langsetmo
- AMBER: salt bridge detection Ye Mei
- AMBER: error message about the input file of sander Ru-Zhen Li
- Re: AMBER: error message about the input file of sander Michael Crowley
Tuesday, 9 November 2004
- Re: AMBER: error message about the input file of sander Ru-Zhen Li
- Re: AMBER: error message about the input file of sander Ru-Zhen Li
- AMBER: Problem with Water solute during MD Daniel Wetzler
- Re: AMBER: Problem with Water solute during MD David A. Case
- AMBER: Leap Greg Kellogg
- Re: AMBER: Leap David A. Case
- Re: AMBER: Problem with Water solute during MD Bill Ross
- RE: AMBER: error message about the input file of sander Ross Walker
- Re: AMBER: error message about the input file of sander Ru-Zhen Li
- AMBER: IBELLY Harianto
- AMBER: Solaris f77 Machine file for Amber7? Joe Nolan
- AMBER: single strand simulation ding
- Re: AMBER: single strand simulation Thomas E. Cheatham, III
- Re: AMBER: Solaris f77 Machine file for Amber7? David A. Case
- AMBER: Building the parallel version in AMBER 8 and GIBBS Ilyas Yildirim
- Re: AMBER: Building the parallel version in AMBER 8 and GIBBS David A. Case
Wednesday, 10 November 2004
- Re: AMBER: Problem with Water solute during MD Daniel Wetzler
- Re: AMBER: Problem with Water solute during MD Bill Ross
- AMBER: AMBER Parameter Database Yanze Zhang
- Re: AMBER: Problem with Water solute during MD David A. Case
- Re: AMBER: Solaris f77 Machine file for Amber7? Joe Nolan
- Re: AMBER: Solaris f77 Machine file for Amber7? David A. Case
- AMBER: parameter set Yanze Zhang
- Re: AMBER: parameter set David A. Case
- Re: AMBER: parameter set Bill Ross
- Re: AMBER: Solaris f77 Machine file for Amber7? Joe Nolan
- AMBER: About the parameter names Ilyas Yildirim
- Re: AMBER: Solaris f77 Machine file for Amber7? David A. Case
- Re: AMBER: About the parameter names David A. Case
- Re: AMBER: Solaris f77 Machine file for Amber7? Joe Nolan
- Re: AMBER: Solaris f77 Machine file for Amber7? David A. Case
- RE: AMBER: Can parallel simulation have a nonperiodic boundary condition? Ross Walker
Thursday, 11 November 2004
- Re: AMBER: Solaris f77 Machine file for Amber7? Joe Nolan
- AMBER: ptraj MURAT CETINKAYA
- Re: AMBER: Solaris f77 Machine file for Amber7? Joe Nolan
- AMBER: Solvation free energy of a charged molecule. Chunhu Tan
- AMBER: glibc version Ye Mei
Friday, 12 November 2004
- Re: AMBER: Solvation free energy of a charged molecule. David A. Case
- AMBER: AMBER 4 Manual? Ru-Zhen Li
- AMBER: Energy change for isomerization reaction of cyclic peptide nlxc
- Re: AMBER: Solvation free energy of a charged molecule. Chunhu Tan
- AMBER: a quick question about carnal Haijun Yang
- Re: AMBER: a quick question about carnal Bill Ross
- AMBER: the energy difference between sander and nmode xiaowei li
- Re: AMBER: Energy change for isomerization reaction of cyclic peptide David A. Case
- Re: AMBER: AMBER 4 Manual? David A. Case
- Re: AMBER: glibc version David A. Case
- Re: AMBER: the energy difference between sander and nmode David A. Case
- AMBER: xleap problems Kepa Koldo Burusco Goñi
- Re: AMBER: xleap problems Mark Williamson
- Re: AMBER: xleap problems Ilyas Yildirim
Saturday, 13 November 2004
- AMBER: Parameters for new residue? Satpal Virdee
- Re: AMBER: Parameters for new residue? David A. Case
- AMBER: convert .pdb to .mol2 bybaker.itsa.ucsf.edu
- Re: AMBER: convert .pdb to .mol2 Ye Mei
- AMBER: Babel bybaker.itsa.ucsf.edu
Sunday, 14 November 2004
- Re: AMBER: Babel Carlos Simmerling
- AMBER: nmode:Number of atoms in -p and -c files do not agree! myang.vitamin.uni.cc
Monday, 15 November 2004
- AMBER: restraintmask problem in ptraj Takanori TANAKA
- Re: AMBER: restraintmask problem in ptraj Viktor Hornak
- Re: AMBER: nmode:Number of atoms in -p and -c files do not agree! David A. Case
- Re: AMBER: a quick question about carnal Haijun Yang
- AMBER: gibbs compilation error Nelson Fonseca
- Re: AMBER: gibbs compilation error David A. Case
Sunday, 14 November 2004
- AMBER: AMBER8 parallel job Emmanuel Giudice
Monday, 15 November 2004
- Re: AMBER: nmode:Number of atoms in -p and -c files do not agree! myang.vitamin.uni.cc
- AMBER: Re: Amber Re: Antechamber problems Kara Wald
- Re: AMBER: nmode:Number of atoms in -p and -c files do not agree! David A. Case
- AMBER: Can xleap to handle homology model altogether X-ray structure? Jack Lei
- AMBER: ifort 8.0 Ilyas Yildirim
- Re: AMBER: ifort 8.0 Jack Lei
- Re: AMBER: Babel FyD
- AMBER: Can xleap handle homology model altogether with X-ray structure? Jack Lei
- AMBER: AMBER8 compiling error under Itanium 2. qlu.notes.cc.sunysb.edu
- Re: AMBER: nmode:Number of atoms in -p and -c files do not agree! myang.vitamin.uni.cc
- AMBER: constant pH simulations reference Sergio E. Wong
- Re: AMBER: AMBER8 compiling error under Itanium 2. Ye Mei
- Re: AMBER: constant pH simulations reference David A. Case
- AMBER: ambpdb segmentation fault justin litchfield
Tuesday, 16 November 2004
- FWD: RE: AMBER: xleap problems Kepa Koldo Burusco Goñi
- AMBER: SUSE 9.1 and AMBER 8 Ilyas Yildirim
- Re: AMBER: SUSE 9.1 and AMBER 8 Andreas Svrcek-Seiler
- INSTALLATION GUIDE FOR IFORT AND AMBER8 IN LINUX SUSE 9.1 ....Re: AMBER: SUSE 9.1 and AMBER 8 Cenk Andac
- AMBER: How to compile the downloadable RESP in UNIX Yanze Zhang
- Re: AMBER: How to compile the downloadable RESP in UNIX Satpal Virdee
- Re: AMBER: Can xleap to handle homology model altogether X-ray structure? David A. Case
- Re: AMBER: AMBER8 compiling error under Itanium 2. Jack Lei
- Re: AMBER: Can xleap to handle homology model altogether X-ray structure? Joachim Reichelt
- AMBER: restrained options Toshifumi Yui
Wednesday, 17 November 2004
- AMBER: <dV/dL> fluctuations in TI Nelson Fonseca
- AMBER: Problem with a single aminoacid as inhibitor Daniel Wetzler
- AMBER: Problem with a single aminoacid as inhibitor Daniel Wetzler
- Re: AMBER: Problem with a single aminoacid as inhibitor Carlos Simmerling
- Re: AMBER: Problem with a single aminoacid as inhibitor david.evans.ulsop.ac.uk
- Re: AMBER: <dV/dL> fluctuations in TI Thomas Steinbrecher
- AMBER: Problem to update antechamber package. Guillaume Bollot
- Re: AMBER: Problem with a single aminoacid as inhibitor M. L. Dodson
- Re: AMBER: Problem with a single aminoacid as inhibitor Daniel Wetzler
- AMBER: RMS of energy in Minimization using SANDER Jack Lei
- RE: AMBER: RMS of energy in Minimization using SANDER Ross Walker
- RE: AMBER: ifort 8.0 Ross Walker
- RE: AMBER: ambpdb segmentation fault Ross Walker
- Re: AMBER: ambpdb segmentation fault justin litchfield
- Re: AMBER: How to compile the downloadable RESP in UNIX Yanze Zhang
Thursday, 18 November 2004
- Re: AMBER: How to compile the downloadable RESP in UNIX Satpal Virdee
- AMBER: Fifth European Workshop in Drug Design Andrea Tafi
- AMBER: Diastereoisomers of ATP William Boxford
- AMBER: calcium van der Waals parameters cailliez
- Re: AMBER: calcium van der Waals parameters Bill Ross
- Re: AMBER: How to compile the downloadable RESP in UNIX Yanze Zhang
- Re: AMBER: <dV/dL> fluctuations in TI Chunhu Tan
Friday, 19 November 2004
- AMBER: Problem with carnal on linux Sébastien Fiorucci
- AMBER: SHAKE probelm Huang, Hai
- RE: AMBER: SHAKE probelm Ross Walker
- RE: AMBER: Problem with carnal on linux Ross Walker
- AMBER: amber8 compilation lucian livadaru
- Re: AMBER: <dV/dL> fluctuations in TI Chunhu Tan
- AMBER: leap compiling problem on a 64-bit machine xhu1.memphis.edu
- RE: AMBER: amber8 compilation Ross Walker
- RE: AMBER: leap compiling problem on a 64-bit machine Ross Walker
- AMBER: Electrolyte concentrations in MD arubin.unmc.edu
- Re: AMBER: leap compiling problem on a 64-bit machine Bill Ross
- RE: AMBER: SHAKE probelm Huang, Hai
- RE: AMBER: SHAKE probelm Ross Walker
- Re: RE: AMBER: leap compiling problem on a 64-bit machine xhu1.memphis.edu
- Re: RE: AMBER: leap compiling problem on a 64-bit machine Tomas Linhart
Saturday, 20 November 2004
- Re: RE: AMBER: leap compiling problem on a 64-bit machine xhu1.memphis.edu
- Re: RE: AMBER: leap compiling problem on a 64-bit machine Tomas Linhart
Sunday, 21 November 2004
- Re: RE: AMBER: leap compiling problem on a 64-bit machine xhu1.memphis.edu
- Re: RE: AMBER: leap compiling problem on a 64-bit machine Tomas Linhart
- Re: RE: AMBER: leap compiling problem on a 64-bit machine xhu1.memphis.edu
- Re: AMBER: ambpdb segmentation fault justin litchfield
- Re: AMBER: ambpdb segmentation fault Bill Ross
Monday, 22 November 2004
- AMBER: calculation of pKa values Peter Trodler
- AMBER: sander, MD problems Kepa Koldo Burusco Goñi
- Re: AMBER: sander, MD problems Carlos Simmerling
- Re: AMBER: calcium van der Waals parameters cailliez
- Re: AMBER: calcium van der Waals parameters Bill Ross
- Re: AMBER: calcium van der Waals parameters Piotr Cieplak
- AMBER: problem solved: leap compiling problem on a 64-bit machine xhu1.memphis.edu
- AMBER: New problem on our 64bit box: xleap Segmentation fault xhu1.memphis.edu
- AMBER: LEaP compilation error on Solaris 9 Joe Nolan
- Re: AMBER: New problem on our 64bit box: xleap Segmentation fault Bill Ross
- RE: AMBER: New problem on our 64bit box: xleap Segmentation fault Ross Walker
- AMBER: generating parmfile containing topology and parameter information Nitin Bhardwaj
- AMBER: questions on dummy atom types in FEP setup Eric Hu
- RE: AMBER: generating parmfile containing topology and parameter information Ross Walker
- Re: AMBER: LEaP compilation error on Solaris 9 David A. Case
- AMBER: mm_pbsa +fillratio Carsten Detering
- Re: AMBER: LEaP compilation error on Solaris 9 Bill Ross
- RE: AMBER: amber8 compilation lucian livadaru
- Re: RE: AMBER: New problem on our 64bit box: xleap Segmentation fault xhu1.memphis.edu
- Re: AMBER: problem solved: leap compiling problem on a 64-bit machine Bill Ross
- Re: AMBER: New problem on our 64bit box: xleap Segmentation fault xhu1.memphis.edu
- RE: AMBER: amber8 compilation Ross Walker
- Re: AMBER: mm_pbsa +fillratio David A. Case
- Re: AMBER: mm_pbsa +fillratio Carsten Detering
- Re: AMBER: questions on dummy atom types in FEP setup Chunhu Tan
- Re: AMBER: problem solved: leap compiling problem on a 64-bit machine xhu1.memphis.edu
- RE: AMBER: generating parmfile containing topology and parameter information Nitin Bhardwaj
- Re: AMBER: generating parmfile containing topology and parameter information David A. Case
- AMBER: Problem with converting AMBER PREP to MOL2 Cenk Andac
- AMBER: mm_pbsa + vertex atom mismatch Carsten Detering
- Re: AMBER: questions on dummy atom types in FEP setup Eric Hu
Tuesday, 23 November 2004
- AMBER: Resend: Problem with converting AMBER8 PREP to MOL2 Cenk Andac
- AMBER: langevin dynamic in sander Stefano.Pieraccini.unimi.it
- AMBER: TI with electrostatic decoupling Nelson Fonseca
- AMBER: Problem with minimisation of an protein-inhibitor complex Daniel Wetzler
- AMBER: restart calculation tang kwa
- Re: AMBER: restart calculation Tomas Linhart
- Re: AMBER: restart calculation tang kwa
- AMBER: Problem with minimisation of an protein-inhibitor complex Daniel Wetzler
- Re: AMBER: restart calculation Carlos Simmerling
- AMBER: add dummy atoms tang kwa
- Re: AMBER: Problem with converting AMBER PREP to MOL2 David A. Case
- Re: AMBER: langevin dynamic in sander David A. Case
- Re: AMBER: add dummy atoms David A. Case
- Re: AMBER: restart calculation David A. Case
- Re: AMBER: TI with electrostatic decoupling David A. Case
- Re: AMBER: Problem with converting AMBER PREP to MOL2 david.evans.ulsop.ac.uk
- RE: AMBER: restart calculation Ross Walker
- Re: AMBER: Problem with converting AMBER PREP to MOL2 Bill Ross
- RE: AMBER: Problem with minimisation of an protein-inhibitor complex Ross Walker
- AMBER: Antechamber problems Kara Wald
- Re: AMBER: TI with electrostatic decoupling Chunhu Tan
- RE: AMBER: SHAKE probelm Huang, Hai
- AMBER: md.out & plot bybaker.itsa.ucsf.edu
- Re: AMBER: md.out & plot Luis Gracia
- RE: AMBER: md.out & plot Ross Walker
- AMBER: cannot load frcmod file properly Eric Hu
- AMBER: Re: md.out & plot bybaker.itsa.ucsf.edu
- AMBER: build a cyclic peptide Eric Hu
- Re: AMBER: cannot load frcmod file properly Chunhu Tan
- Re: AMBER: build a cyclic peptide Bill Ross
- AMBER: Installation of AMBER8 on AMD cluster using pgf90 Hwankyu Lee
- Re: AMBER: build a cyclic peptide Carlos Simmerling
- Re: AMBER: Re: md.out & plot Furse, Kristina Elisabet
- Re: AMBER: Re: md.out & plot Furse, Kristina Elisabet
- AMBER: Re: md.out & plot bybaker.itsa.ucsf.edu
- Re: AMBER: Installation of AMBER8 on AMD cluster using pgf90 David A. Case
Wednesday, 24 November 2004
- Re: AMBER: Installation of AMBER8 on AMD cluster using pgf90 Hwankyu Lee
- AMBER: missing XaLeap_wcl file Nitin Bhardwaj
- Re: AMBER: build a cyclic peptide Eric Hu
- Re: AMBER: cannot load frcmod file properly Eric Hu
- AMBER: extracting energy from trajector? MURAT CETINKAYA
- Re: AMBER: build a cyclic peptide Bill Ross
- Re: AMBER: extracting energy from trajector? Bill Ross
- Re: AMBER: build a cyclic peptide Carlos Simmerling
- Re: AMBER: extracting energy from trajector? Carlos Simmerling
- Re: AMBER: extracting energy from trajector? Carlos Simmerling
- Re: AMBER: extracting energy from trajector? Bill Ross
- Re: AMBER: extracting energy from trajector? David Smith
- Re: AMBER: build a cyclic peptide Eric Hu
- Re: AMBER: build a cyclic peptide Carlos Simmerling
- Re: AMBER: cannot load frcmod file properly Chunhu Tan
- Re: AMBER: build a cyclic peptide Bill Ross
- AMBER: nucgen problem opitz.che.udel.edu
Thursday, 25 November 2004
- Re: AMBER: nucgen problem david.evans.ulsop.ac.uk
- AMBER: Regarding Dielectric Constant in AMBER8 pande.vineet.fc.up.pt
- Re: AMBER: Regarding Dielectric Constant in AMBER8 Carlos Simmerling
- Re: AMBER: Regarding Dielectric Constant in AMBER8 pande.vineet.fc.up.pt
- Re: AMBER: Regarding Dielectric Constant in AMBER8 Carlos Simmerling
- Re: AMBER: nucgen problem Bill Ross
- Re: AMBER: question about molsurf Chris Page
Friday, 26 November 2004
- Re: AMBER: Regarding Dielectric Constant in AMBER8 pande.vineet.fc.up.pt
- Re: AMBER: Regarding Dielectric Constant in AMBER8 Carlos Simmerling
- Re: AMBER: Regarding Dielectric Constant in AMBER8 pande.vineet.fc.up.pt
- Re: AMBER: Regarding Dielectric Constant in AMBER8 pande.vineet.fc.up.pt
- Re: AMBER: Regarding Dielectric Constant in AMBER8 Carlos Simmerling
- Re: AMBER: Regarding Dielectric Constant in AMBER8 pande.vineet.fc.up.pt
- Re: AMBER: Regarding Dielectric Constant in AMBER8 Carlos Simmerling
- AMBER: combine crd files bybaker.itsa.ucsf.edu
- AMBER: sander.QMMM on Mac justin litchfield
- Re: AMBER: combine crd files Furse, Kristina Elisabet
- Re: AMBER: combine crd files Carlos Simmerling
- RE: AMBER: sander.QMMM on Mac Ross Walker
Saturday, 27 November 2004
- AMBER: Protein with maximum hydrogen bonds anshul.imtech.res.in
Friday, 26 November 2004
- RE: AMBER: Protein with maximum hydrogen bonds Ross Walker
Saturday, 27 November 2004
- AMBER: About Disulfer bond Xiao He
- Re: AMBER: sander.QMMM on Mac justin litchfield
- Re: AMBER: Protein with maximum hydrogen bonds pande.vineet.fc.up.pt
- Fwd: Re: AMBER: Protein with maximum hydrogen bonds pande.vineet.fc.up.pt
- Re: AMBER: Protein with maximum hydrogen bonds Sanjeev B.S.
- Re: AMBER: About Disulfer bond David A. Case
- AMBER: xfl90 and xlc "C" compiler Dr. Noah Allen
- Re: AMBER: xfl90 and xlc "C" compiler justin litchfield
- AMBER: GO lie Amber simulation Alena Shmygelska
- Re: AMBER: GO lie Amber simulation David A. Case
- AMBER: saving trajectory parameters Ed Pate
- RE: AMBER: saving trajectory parameters Ross Walker
- AMBER: MD run: frozen bybaker.itsa.ucsf.edu
- RE: AMBER: MD run: frozen Ross Walker
Sunday, 28 November 2004
- Re: AMBER: MD run: frozen Carlos Simmerling
- AMBER: FEP - GIBBS of charged sidechains using IELPER Annette Höglund
- Re: AMBER: FEP - GIBBS of charged sidechains using IELPER David A. Case
- Re: AMBER: MD run: frozen bybaker.itsa.ucsf.edu
- Re: AMBER: extracting energy from trajector? MURAT CETINKAYA
- AMBER: question! Marsita M
Monday, 29 November 2004
- Re: AMBER: extracting energy from trajector? David Smith
- Re: AMBER: extracting energy from trajector? David Smith
- AMBER: problem in quasih.f diagonalising matrix Phineus Markwick
- Re: AMBER: extracting energy from trajector? MURAT CETINKAYA
- Re: AMBER: problem in quasih.f diagonalising matrix David A. Case
- Re: AMBER: extracting energy from trajector? David Smith
- AMBER: Leap & x86_64 / PGI (was: xleap solvatebox/oct problem) Hannes Barsch
- Re: AMBER: extracting energy from trajector? MURAT CETINKAYA
- Re: AMBER: extracting energy from trajector? David Smith
- AMBER: Restrained minimization problem opitz.che.udel.edu
- Re: AMBER: Restrained minimization problem Bill Ross
- Re: AMBER: Restrained minimization problem opitz.che.udel.edu
- Re: AMBER: Restrained minimization problem opitz.che.udel.edu
- Re: AMBER: Restrained minimization problem Thomas E. Cheatham, III
- Re: AMBER: Restrained minimization problem Bill Ross
- Re: AMBER: Restrained minimization problem David A. Case
- Re: AMBER: Restrained minimization problem Furse, Kristina Elisabet
- AMBER: increasing the maximum value of NPHB parameter Alena Shmygelska
Tuesday, 30 November 2004
- AMBER: Slowly releasing restraints Marcin Krol
- AMBER: amber8 parallel installation with mpich cailliez
- Re: AMBER: amber8 parallel installation with mpich Marc Baaden
- Re: AMBER: amber8 parallel installation with mpich Marc Baaden
- AMBER: problem loading mdcrd to VMD Ru-Zhen Li
- Re: AMBER: problem loading mdcrd to VMD Stefano.Pieraccini.unimi.it
- Re: AMBER: problem loading mdcrd to VMD David Smith
- Re: AMBER: problem loading mdcrd to VMD David E. Konerding
- Re: AMBER: problem loading mdcrd to VMD Ru-Zhen Li
- AMBER: Implicit 4r md yen li
- Re: AMBER: problem loading mdcrd to VMD David Smith
- Re: AMBER: problem loading mdcrd to VMD myang.vitamin.uni.cc
- Re: AMBER: Slowly releasing restraints David A. Case
- Re: AMBER: problem loading mdcrd to VMD John Bushnell
- AMBER: Re: AMBER: problem loading mdcrd to VMD Dawsonzhu.aol.com
- Re: AMBER: problem loading mdcrd to VMD Ru-Zhen Li
- AMBER: memory prolem of the nmode calculation Xiao Jian Tan
- Re: AMBER: memory prolem of the nmode calculation David A. Case
- Re: AMBER: increasing the maximum value of NPHB parameter David A. Case

Last message date: Wed Dec 01 2004 - 02:53:00 PST
Archived on: Fri Dec 20 2024 - 05:53:25 PST

Amber Archive Nov 2004 by date