Dear amber users,
I have a peptide that goes from extended to bended conformation during
MD run. I collect unformatted trajectory and monitor the conformation
change by measuring end to end distance (N 1 to C 5) with carnal. I
want to extract torsional angles from the frames corresponding to the
bent conformation only, i.e. for the structures that have end to end
distance 5 angstrom or less. Is it possible to do with carnal, or any
other means?
Thanks
Eva.
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Received on Wed Nov 03 2004 - 18:53:00 PST
