Amber Archive Jan 2021: by author

Abdul-Rashid III Sampaco
- Re: [AMBER] pytraj in python 3.9 (Wed Jan 06 2021 - 19:53:50 PST)
- [AMBER] pytraj in python 3.9 (Tue Jan 05 2021 - 20:54:53 PST)
Adeleh Mokhles Gerami
- [AMBER] rotdif analysis in cpptraj (Wed Jan 27 2021 - 06:41:02 PST)
Adrian Roitberg
- Re: [AMBER] Amber20 with PLUMED running slow, with GPU utilisation ~40% (Tue Jan 12 2021 - 09:55:56 PST)
Airy Sanjeev
- [AMBER] DNA protein simulation protocol (Mon Jan 25 2021 - 01:04:14 PST)
- Re: [AMBER] Extending DNA structure (Tue Jan 19 2021 - 02:00:55 PST)
- [AMBER] Extending DNA structure (Mon Jan 18 2021 - 19:57:16 PST)
- Re: [AMBER] Problem in running cmake (Mon Jan 11 2021 - 19:01:15 PST)
- [AMBER] Problem in running cmake (Sun Jan 10 2021 - 23:17:00 PST)
Amanda Buyan
- Re: [AMBER] Amber20 with PLUMED running slow, with GPU utilisation ~40% (Tue Jan 12 2021 - 15:36:36 PST)
- [AMBER] Amber20 with PLUMED running slow, with GPU utilisation ~40% (Mon Jan 11 2021 - 19:24:58 PST)
Amit Sharma (Asstt. Prof., MCARS)
- Re: [AMBER] Suggestions on crossing energy barrier to break strong HBs (Fri Jan 29 2021 - 22:27:43 PST)
- [AMBER] Suggestions on crossing energy barrier to break strong HBs (Fri Jan 29 2021 - 15:40:35 PST)
Ana Ziad
- [AMBER] Cpptraj v13 command is not working fixatomorder (Sun Jan 10 2021 - 23:01:44 PST)
angad sharma
- [AMBER] Fwd: copper RISM (Wed Jan 06 2021 - 06:13:38 PST)
- [AMBER] Generating LJ paramters of divalent copper ions (Sat Jan 02 2021 - 10:15:43 PST)
Antoine MARION
- Re: [AMBER] makedepend for sander (Wed Jan 20 2021 - 06:14:04 PST)
- [AMBER] makedepend for sander (Wed Jan 20 2021 - 03:26:06 PST)
assawin daducale
- [AMBER] Problem with cudaMalloc GpuBuffer Allocate failed out of memory (Fri Jan 01 2021 - 11:07:25 PST)
Athena N
- [AMBER] Fwd: Domain distances using cpptraj (Sat Jan 09 2021 - 20:15:28 PST)
- [AMBER] Domain distances using cpptraj (Fri Jan 08 2021 - 23:19:12 PST)
Ayesha Fatima
- [AMBER] Non zero ligand warning (Sun Jan 31 2021 - 05:10:51 PST)
- [AMBER] combining crashed trajectories (Wed Jan 20 2021 - 05:58:19 PST)
Beatriz Gomes Guimaraes
- Re: [AMBER] Problems when running make test.parallel (Mon Jan 18 2021 - 10:53:18 PST)
- [AMBER] Problems when running make test.parallel (Tue Jan 12 2021 - 06:35:36 PST)
- Re: [AMBER] Amber 20 installation, problems with the testing phase (Thu Jan 07 2021 - 13:41:27 PST)
- Re: [AMBER] Amber 20 installation, problems with the testing phase (Thu Jan 07 2021 - 05:21:44 PST)
- Re: [AMBER] Amber 20 installation, problems with the testing phase (Wed Jan 06 2021 - 08:17:11 PST)
- Re: [AMBER] Amber 20 installation, problems with the testing phase (Tue Jan 05 2021 - 06:31:46 PST)
- [AMBER] Amber 20 installation, problems with the testing phase (Mon Jan 04 2021 - 13:20:26 PST)
Bill Ross
- Re: [AMBER] Error in xleap: water molecules (Sat Jan 09 2021 - 18:31:13 PST)
- Re: [AMBER] Error in xleap: water molecules (Sat Jan 09 2021 - 15:52:54 PST)
- Re: [AMBER] Error in xleap: water molecules (Sat Jan 09 2021 - 15:31:41 PST)
- Re: [AMBER] Error in xleap: water molecules (Sat Jan 09 2021 - 13:37:22 PST)
- Re: [AMBER] Error in xleap: water molecules (Sat Jan 09 2021 - 09:30:56 PST)
- Re: [AMBER] Error in xleap: water molecules (Fri Jan 08 2021 - 20:43:00 PST)
- Re: [AMBER] How does the xleap/teap recognize the H3O+ (hydronium) ions? (Wed Jan 06 2021 - 18:59:35 PST)
- Re: [AMBER] How does the xleap/teap recognize the H3O+ (hydronium) ions? (Wed Jan 06 2021 - 18:56:01 PST)
- Re: [AMBER] How does the xleap/teap recognize the H3O+ (hydronium) ions? (Wed Jan 06 2021 - 18:24:57 PST)
- Re: [AMBER] How does the xleap/teap recognize the H3O+ (hydronium) ions? (Wed Jan 06 2021 - 18:03:59 PST)
- Re: [AMBER] How does the xleap/teap recognize the H3O+ (hydronium) ions? (Wed Jan 06 2021 - 17:08:11 PST)
- Re: [AMBER] How does the xleap/teap recognize the H3O+ (hydronium) ions? (Wed Jan 06 2021 - 17:06:34 PST)
- Re: [AMBER] NaN VDWAALS Error During Minimization (Wed Jan 06 2021 - 00:48:17 PST)
- Re: [AMBER] NaN VDWAALS Error During Minimization (Tue Jan 05 2021 - 21:51:28 PST)
- Re: [AMBER] NaN VDWAALS Error During Minimization (Tue Jan 05 2021 - 20:01:06 PST)
- Re: [AMBER] NaN VDWAALS Error During Minimization (Tue Jan 05 2021 - 19:59:23 PST)
- Re: [AMBER] NaN VDWAALS Error During Minimization (Tue Jan 05 2021 - 19:45:56 PST)
- Re: [AMBER] NaN VDWAALS Error During Minimization (Tue Jan 05 2021 - 19:05:23 PST)
- Re: [AMBER] error... (Sun Jan 03 2021 - 13:14:18 PST)
- Re: [AMBER] error... (Sun Jan 03 2021 - 11:07:33 PST)
Biplab Ghosh
- [AMBER] Lateral movement of membrane bound protein during MD simulation in Amber (Sun Jan 10 2021 - 21:27:36 PST)
Brian Radak
- Re: [AMBER] Bug when using RESPA in REMD runs (Sat Jan 30 2021 - 07:01:45 PST)
Carlos Simmerling
- Re: [AMBER] Bug when using RESPA in REMD runs (Sat Jan 30 2021 - 07:08:30 PST)
- Re: [AMBER] Error in minimization (Thu Jan 28 2021 - 13:51:06 PST)
- Re: [AMBER] how to get amber 18 tools (Wed Jan 27 2021 - 06:10:59 PST)
- Re: [AMBER] OPC monovalent ion parameters (Mon Jan 25 2021 - 12:35:11 PST)
- Re: [AMBER] How to extract restart file with velocity from a trajectory file? (Fri Jan 22 2021 - 09:32:11 PST)
- Re: [AMBER] Reproducing Tutorial: Analysis of a nucleic acid simulation (Mon Jan 18 2021 - 18:02:55 PST)
- Re: [AMBER] Reproducing Tutorial: Analysis of a nucleic acid simulation (Mon Jan 18 2021 - 17:12:30 PST)
- Re: [AMBER] Reproducing Tutorial: Analysis of a nucleic acid simulation (Mon Jan 18 2021 - 16:01:25 PST)
- Re: [AMBER] Reproducing Tutorial: Analysis of a nucleic acid simulation (Mon Jan 18 2021 - 15:43:41 PST)
- Re: [AMBER] Reproducing Tutorial: Analysis of a nucleic acid simulation (Mon Jan 18 2021 - 15:28:15 PST)
- Re: [AMBER] PROTEIN-DNA RMSD plots (Thu Jan 14 2021 - 03:22:06 PST)
- Re: [AMBER] LEaP Error/questions. (Wed Jan 13 2021 - 06:44:49 PST)
- Re: [AMBER] LEaP Error/questions. (Wed Jan 13 2021 - 06:13:08 PST)
- Re: [AMBER] error job (Wed Jan 13 2021 - 04:40:21 PST)
- Re: [AMBER] LEaP Error/questions. (Wed Jan 13 2021 - 04:37:09 PST)
- Re: [AMBER] Pull group of atoms together (Tue Jan 12 2021 - 11:43:09 PST)
- Re: [AMBER] Pull group of atoms together (Tue Jan 12 2021 - 11:25:42 PST)
- Re: [AMBER] error job (Tue Jan 12 2021 - 07:41:44 PST)
- Re: [AMBER] error job (Tue Jan 12 2021 - 06:51:34 PST)
- Re: [AMBER] LEaP Error/questions. (Tue Jan 12 2021 - 05:05:01 PST)
- Re: [AMBER] LEaP Error/questions. (Mon Jan 11 2021 - 14:09:33 PST)
- Re: [AMBER] Pull group of atoms together (Mon Jan 11 2021 - 10:43:19 PST)
- Re: [AMBER] LEaP Error/questions. (Mon Jan 11 2021 - 09:29:29 PST)
- Re: [AMBER] RMSD analysis (Thu Jan 07 2021 - 17:55:01 PST)
- Re: [AMBER] GB pairwise decomposition - Salt Bridge (Wed Jan 06 2021 - 06:49:36 PST)
- Re: [AMBER] Sander code doesn’t output trajectory files (Wed Jan 06 2021 - 06:25:48 PST)
- Re: [AMBER] Energy Evaluations (Tue Jan 05 2021 - 04:37:36 PST)
- Re: [AMBER] error... (Mon Jan 04 2021 - 05:38:24 PST)
- Re: [AMBER] error... (Sun Jan 03 2021 - 13:29:47 PST)
- Re: [AMBER] doubt frames simulation (Sat Jan 02 2021 - 05:26:24 PST)
CAVALLARO MATTIA
- [AMBER] Problem with PB calculation (Sat Jan 02 2021 - 06:24:20 PST)
Charo del Genio
- [AMBER] Patches to fix the replica exchange restart bug (Sun Jan 31 2021 - 12:11:59 PST)
- [AMBER] Found bug in sander in restarting SGLD replica exchange runs (Sun Jan 31 2021 - 04:35:28 PST)
- [AMBER] Can't restart a RXSGLD run (possible bug) (Sun Jan 31 2021 - 02:13:41 PST)
- Re: [AMBER] Bug when using RESPA in REMD runs (Sat Jan 30 2021 - 07:51:18 PST)
- [AMBER] Bug when using RESPA in REMD runs (Sat Jan 30 2021 - 03:23:41 PST)
- [AMBER] Potential energy discrepancy in RXSGLD (Fri Jan 29 2021 - 08:28:51 PST)
Daniel Fernández Remacha
- Re: [AMBER] Error while clustering on CPPTRAJ (Tue Jan 19 2021 - 09:50:24 PST)
Daniel Roe
- Re: [AMBER] How to fix the issue of generating restart file from a trajectory? (Thu Jan 28 2021 - 07:10:41 PST)
- Re: [AMBER] Help to generate prmtop and .crd files from a PDB trajectory (Thu Jan 28 2021 - 07:03:28 PST)
- Re: [AMBER] Fwd: Distance of every c alpha in a protein to every other c alpha (Mon Jan 25 2021 - 06:16:32 PST)
- Re: [AMBER] Amber 16/cpptraj diffusion command (Mon Jan 25 2021 - 06:11:36 PST)
- Re: [AMBER] combining crashed trajectories (Fri Jan 22 2021 - 10:46:45 PST)
- Re: [AMBER] Cpptraj (Fri Jan 22 2021 - 09:23:30 PST)
- Re: [AMBER] Cpptraj (Thu Jan 21 2021 - 07:19:48 PST)
- [AMBER] Major Cpptraj Update (GitHub) (Wed Jan 20 2021 - 11:54:44 PST)
- Re: [AMBER] Error while clustering on CPPTRAJ (Tue Jan 19 2021 - 10:03:31 PST)
- Re: [AMBER] Error while clustering on CPPTRAJ (Tue Jan 19 2021 - 09:39:31 PST)
- Re: [AMBER] Distance of every c alpha in a protein to every other c alpha (Tue Jan 19 2021 - 06:46:07 PST)
- Re: [AMBER] Error while clustering on CPPTRAJ (Thu Jan 14 2021 - 15:58:44 PST)
- Re: [AMBER] Error while clustering on CPPTRAJ (Thu Jan 14 2021 - 07:51:32 PST)
- Re: [AMBER] LEaP Error/questions. (Wed Jan 13 2021 - 06:11:24 PST)
- Re: [AMBER] Problems when running make test.parallel (Tue Jan 12 2021 - 08:58:14 PST)
- Re: [AMBER] Issue about the generaton of rst files (Tue Jan 12 2021 - 06:28:48 PST)
- Re: [AMBER] Cpptraj v13 command is not working fixatomorder (Mon Jan 11 2021 - 09:43:55 PST)
- Re: [AMBER] Issue about the generaton of rst files (Mon Jan 11 2021 - 09:42:02 PST)
- Re: [AMBER] RMSD analysis (Fri Jan 08 2021 - 13:09:54 PST)
- Re: [AMBER] CPPTRAJ error while Clustering (Fri Jan 08 2021 - 09:31:49 PST)
- Re: [AMBER] cif to pdb (Wed Jan 06 2021 - 02:18:54 PST)
- Re: [AMBER] Energy Evaluations (Tue Jan 05 2021 - 08:14:15 PST)
- Re: [AMBER] PROTEIN-DNA rmsd plot (Mon Jan 04 2021 - 06:09:10 PST)
David A Case
- Re: [AMBER] Non zero ligand warning (Sun Jan 31 2021 - 06:24:59 PST)
- Re: [AMBER] Bug when using RESPA in REMD runs (Sat Jan 30 2021 - 07:01:26 PST)
- Re: [AMBER] Suggestions on crossing energy barrier to break strong HBs (Fri Jan 29 2021 - 19:06:00 PST)
- Re: [AMBER] in chimera, which one should I use for carbohydrates (Fri Jan 29 2021 - 09:32:23 PST)
- Re: [AMBER] max pairlist cutoff must be less than unit cell max sphere radius! (Thu Jan 28 2021 - 07:07:32 PST)
- Re: [AMBER] technical problems with installing amber20 (Thu Jan 28 2021 - 07:05:06 PST)
- Re: [AMBER] technical problems with installing amber20 (Wed Jan 27 2021 - 12:21:43 PST)
- Re: [AMBER] how to get amber 18 tools (Wed Jan 27 2021 - 12:09:44 PST)
- Re: [AMBER] pdb4amber error (Wed Jan 27 2021 - 05:14:14 PST)
- Re: [AMBER] Running simulations (Tue Jan 26 2021 - 11:24:03 PST)
- Re: [AMBER] PrmtopError: Complex natom != receptor natom + ligand natom (Tue Jan 26 2021 - 11:19:55 PST)
- Re: [AMBER] PrmtopError: Complex natom != receptor natom + ligand natom (Mon Jan 25 2021 - 19:17:14 PST)
- Re: [AMBER] DNA protein simulation protocol (Mon Jan 25 2021 - 19:11:46 PST)
- Re: [AMBER] antechamber assigns DU as atom type for nitrogen (Sat Jan 23 2021 - 14:23:53 PST)
- Re: [AMBER] Energy minimization script (Fri Jan 22 2021 - 07:22:15 PST)
- Re: [AMBER] Fwd: Error during amber16 installation (Fri Jan 22 2021 - 07:17:02 PST)
- Re: [AMBER] question (Thu Jan 21 2021 - 05:19:27 PST)
- Re: [AMBER] Fwd: Error during amber16 installation (Thu Jan 21 2021 - 05:16:12 PST)
- Re: [AMBER] Creating input files using tleap (Wed Jan 20 2021 - 05:30:06 PST)
- Re: [AMBER] makedepend for sander (Wed Jan 20 2021 - 05:09:43 PST)
- Re: [AMBER] working with mmpbsa with protein and three ligands in same complex (Sun Jan 17 2021 - 07:16:54 PST)
- Re: [AMBER] NonUniversalWarning: Modified off-diagonal LJ parameters detected (Sat Jan 16 2021 - 11:22:39 PST)
- Re: [AMBER] NonUniversalWarning: Modified off-diagonal LJ parameters detected (Sat Jan 16 2021 - 06:45:31 PST)
- Re: [AMBER] How to use GLYCAM_06j-1 in LAMMPS (Sat Jan 16 2021 - 06:44:04 PST)
- Re: [AMBER] LEaP Error/questions. (Fri Jan 15 2021 - 12:41:17 PST)
- Re: [AMBER] LEaP Error/questions. (Thu Jan 14 2021 - 14:15:21 PST)
- Re: [AMBER] Number of na, cl ions (Thu Jan 14 2021 - 14:08:49 PST)
- Re: [AMBER] gaff/parm (Thu Jan 14 2021 - 05:34:07 PST)
- Re: [AMBER] LEaP Error/questions. (Wed Jan 13 2021 - 08:11:59 PST)
- Re: [AMBER] Errors whilst installing GPU Amber20 (Wed Jan 13 2021 - 05:37:13 PST)
- Re: [AMBER] Non-integer/zero charges from RESP fitting? (Wed Jan 13 2021 - 05:15:17 PST)
- Re: [AMBER] Amber20 with PLUMED running slow, with GPU utilisation ~40% (Tue Jan 12 2021 - 09:51:06 PST)
- Re: [AMBER] error job (Tue Jan 12 2021 - 05:25:58 PST)
- Re: [AMBER] LEaP Error/questions. (Tue Jan 12 2021 - 05:21:37 PST)
- Re: [AMBER] LEaP Error/questions. (Tue Jan 12 2021 - 05:17:15 PST)
- Re: [AMBER] LEaP Error/questions. (Mon Jan 11 2021 - 08:44:16 PST)
- Re: [AMBER] How to use AM1 for Ti atom in Amber? (Mon Jan 11 2021 - 05:32:54 PST)
- Re: [AMBER] LEaP Error/questions. (Mon Jan 11 2021 - 05:29:47 PST)
- Re: [AMBER] error job (Mon Jan 11 2021 - 05:26:09 PST)
- Re: [AMBER] Problem in running cmake (Mon Jan 11 2021 - 05:23:31 PST)
- Re: [AMBER] backbone rmsd between mutant trajectories, comparing conformational space sampled (Mon Jan 11 2021 - 05:18:40 PST)
- Re: [AMBER] Probmlems compiling under macOS (Mon Jan 11 2021 - 05:11:29 PST)
- Re: [AMBER] TI simulation blowing up with pmemd.CUDA (Mon Jan 11 2021 - 05:09:12 PST)
- [AMBER] Amber GPU performance history (Sun Jan 10 2021 - 11:32:01 PST)
- Re: [AMBER] TI simulation blowing up with pmemd.CUDA (Sun Jan 10 2021 - 11:28:09 PST)
- Re: [AMBER] Error in xleap: water molecules (Sun Jan 10 2021 - 07:45:24 PST)
- Re: [AMBER] Error searching for compatible GPU (Sun Jan 10 2021 - 07:35:50 PST)
- Re: [AMBER] Probmlems compiling under macOS (Sun Jan 10 2021 - 05:46:50 PST)
- Re: [AMBER] Fwd: Domain distances using cpptraj (Sun Jan 10 2021 - 05:23:03 PST)
- Re: [AMBER] Error in xleap: water molecules (Sat Jan 09 2021 - 18:25:13 PST)
- Re: [AMBER] Error in xleap: water molecules (Sat Jan 09 2021 - 13:10:50 PST)
- Re: [AMBER] Error in xleap: water molecules (Sat Jan 09 2021 - 05:51:19 PST)
- Re: [AMBER] MMPBSA.py.MPI not build in Amber20 (Fri Jan 08 2021 - 07:10:57 PST)
- Re: [AMBER] Bug in the Mol2 format: space converted into a new oxygen atom (Fri Jan 08 2021 - 07:01:31 PST)
- Re: [AMBER] tinker_to_amber (Fri Jan 08 2021 - 06:57:54 PST)
- Re: [AMBER] MD GPU Scaling Performance (Fri Jan 08 2021 - 06:47:42 PST)
- Re: [AMBER] Amber 20 installation, problems with the testing phase (Thu Jan 07 2021 - 12:44:27 PST)
- Re: [AMBER] Sander code doesn’t output trajectory files (Wed Jan 06 2021 - 06:34:44 PST)
- Re: [AMBER] pytraj in python 3.9 (Wed Jan 06 2021 - 06:29:39 PST)
- Re: [AMBER] Setting PME cutoff in Crystal Simulations (Wed Jan 06 2021 - 06:22:13 PST)
- Re: [AMBER] NaN VDWAALS Error During Minimization (Tue Jan 05 2021 - 19:44:39 PST)
- Re: [AMBER] Amber 20 installation, problems with the testing phase (Tue Jan 05 2021 - 19:37:14 PST)
- Re: [AMBER] Setting PME cutoff in Crystal Simulations (Tue Jan 05 2021 - 05:35:13 PST)
- Re: [AMBER] cif to pdb (Tue Jan 05 2021 - 05:30:30 PST)
- Re: [AMBER] Amber 20 installation, problems with the testing phase (Tue Jan 05 2021 - 05:26:19 PST)
- Re: [AMBER] PROTEIN-DNA rmsd plot (Mon Jan 04 2021 - 05:19:42 PST)
- Re: [AMBER] Setting PME cutoff in Crystal Simulations (Mon Jan 04 2021 - 05:14:34 PST)
- Re: [AMBER] do you know (Sun Jan 03 2021 - 06:16:11 PST)
- Re: [AMBER] Generating LJ paramters of divalent copper ions (Sun Jan 03 2021 - 06:09:27 PST)
- Re: [AMBER] doubt frames simulation (Sat Jan 02 2021 - 05:55:59 PST)
David Cerutti
- Re: [AMBER] NaN VDWAALS Error During Minimization (Tue Jan 05 2021 - 22:36:39 PST)
- Re: [AMBER] NaN VDWAALS Error During Minimization (Tue Jan 05 2021 - 17:29:19 PST)
Debarati DasGupta
- [AMBER] Can we perform combined clustering with multiple prmtop files and mdcrd files? (Fri Jan 29 2021 - 06:36:40 PST)
- [AMBER] Spam purewater keyword (Mon Jan 11 2021 - 12:49:02 PST)
- Re: [AMBER] TI simulation blowing up with pmemd.CUDA (Mon Jan 11 2021 - 09:41:36 PST)
- Re: [AMBER] TI simulation blowing up with pmemd.CUDA (Mon Jan 11 2021 - 07:27:22 PST)
- Re: [AMBER] TI simulation blowing up with pmemd.CUDA (Mon Jan 11 2021 - 05:52:01 PST)
Delwakkada Liyanage, Senal Dinuka
- Re: [AMBER] TI simulation blowing up with pmemd.CUDA (Sun Jan 10 2021 - 12:08:21 PST)
- [AMBER] TI simulation blowing up with pmemd.CUDA (Sun Jan 10 2021 - 10:07:39 PST)
Devlina Chakravarty
- [AMBER] Help to generate prmtop and .crd files from a PDB trajectory (Mon Jan 25 2021 - 17:46:03 PST)
dnlfr1994.gmail.com
- Re: [AMBER] Error while clustering on CPPTRAJ (Tue Jan 19 2021 - 09:20:52 PST)
- Re: [AMBER] Error while clustering on CPPTRAJ (Thu Jan 14 2021 - 09:50:22 PST)
- [AMBER] Error while clustering on CPPTRAJ (Thu Jan 14 2021 - 05:03:45 PST)
Dr. Anselm Horn
- Re: [AMBER] combining crashed trajectories (Wed Jan 20 2021 - 09:25:43 PST)
- Re: [AMBER] Question of targeted molecular dynamics simulation (Fri Jan 15 2021 - 09:14:18 PST)
- Re: [AMBER] PROTEIN-DNA RMSD plots (Thu Jan 14 2021 - 04:55:59 PST)
Eduardo R. Almeida
- Re: [AMBER] Error in xleap: water molecules (Sun Jan 10 2021 - 11:13:36 PST)
- Re: [AMBER] Error in xleap: water molecules (Sat Jan 09 2021 - 19:02:21 PST)
- Re: [AMBER] Error in xleap: water molecules (Sat Jan 09 2021 - 15:44:17 PST)
- Re: [AMBER] Error in xleap: water molecules (Sat Jan 09 2021 - 15:29:40 PST)
- Re: [AMBER] Error in xleap: water molecules (Sat Jan 09 2021 - 06:42:19 PST)
- [AMBER] Error in xleap: water molecules (Fri Jan 08 2021 - 15:39:20 PST)
- Re: [AMBER] How does the xleap/teap recognize the H3O+ (hydronium) ions? (Wed Jan 06 2021 - 19:05:49 PST)
- Re: [AMBER] How does the xleap/teap recognize the H3O+ (hydronium) ions? (Wed Jan 06 2021 - 18:37:00 PST)
- Re: [AMBER] How does the xleap/teap recognize the H3O+ (hydronium) ions? (Wed Jan 06 2021 - 18:18:58 PST)
- Re: [AMBER] How does the xleap/teap recognize the H3O+ (hydronium) ions? (Wed Jan 06 2021 - 17:33:46 PST)
- Re: [AMBER] How does the xleap/teap recognize the H3O+ (hydronium) ions? (Wed Jan 06 2021 - 17:28:27 PST)
- [AMBER] How does the xleap/teap recognize the H3O+ (hydronium) ions? (Wed Jan 06 2021 - 15:15:55 PST)
- [AMBER] Error in the apr.py code - steered MD simulation (Mon Jan 04 2021 - 19:29:23 PST)
Elvis A F Martis
- Re: [AMBER] MMPBSA calculation cpptraj failed with ligand prmtop (Wed Jan 20 2021 - 23:52:57 PST)
- Re: [AMBER] MMPBSA.py.MPI not build in Amber20 (Fri Jan 08 2021 - 07:35:44 PST)
- Re: [AMBER] MMPBSA.py.MPI not build in Amber20 (Mon Jan 04 2021 - 09:19:43 PST)
- Re: [AMBER] Problem with cudaMalloc GpuBuffer Allocate failed out of memory (Fri Jan 01 2021 - 20:36:06 PST)
Eugen Hruska
- [AMBER] abfQMMM with Terachem (Tue Jan 12 2021 - 10:21:06 PST)
Fabian Glaser
- Re: [AMBER] Steered molecular dynamics Simulation (Sat Jan 16 2021 - 06:56:04 PST)
- [AMBER] US or SMD for torsion angle steering? (Mon Jan 11 2021 - 06:31:08 PST)
- Re: [AMBER] SMD & MULTI_RMSD (Mon Jan 11 2021 - 06:19:10 PST)
- Re: [AMBER] SMD & MULTI_RMSD (Sun Jan 03 2021 - 13:09:16 PST)
- [AMBER] SMD & MULTI_RMSD (Sun Jan 03 2021 - 09:47:21 PST)
Feng Pan
- Re: [AMBER] abmd ignores cv_min cv_max and resolution for colvar="TORSION" (Fri Jan 29 2021 - 12:39:46 PST)
- Re: [AMBER] The long and winding STSM (Fri Jan 29 2021 - 12:37:48 PST)
- Re: [AMBER] US or SMD for torsion angle steering? (Tue Jan 12 2021 - 06:35:32 PST)
- Re: [AMBER] SMD & MULTI_RMSD (Mon Jan 11 2021 - 12:11:07 PST)
- Re: [AMBER] SMD & MULTI_RMSD (Tue Jan 05 2021 - 06:43:15 PST)
- Re: [AMBER] SMD & MULTI_RMSD (Sun Jan 03 2021 - 12:50:54 PST)
Goetz, Andreas
- Re: [AMBER] Missing Iron (Fe) DFTB3 parameters for QM/MM simulation of Enzyme (Tue Jan 12 2021 - 16:15:54 PST)
Gordon Richard Chalmers
- [AMBER] do you know (Sun Jan 03 2021 - 04:57:50 PST)
Gustaf Olsson
- Re: [AMBER] Probmlems compiling under macOS (Wed Jan 13 2021 - 22:32:01 PST)
- Re: [AMBER] Probmlems compiling under macOS (Sun Jan 10 2021 - 13:37:31 PST)
- Re: [AMBER] Probmlems compiling under macOS (Sun Jan 10 2021 - 09:24:07 PST)
- [AMBER] Probmlems compiling under macOS (Sun Jan 10 2021 - 00:13:00 PST)
Hashemi, Mohtadin
- [AMBER] Typo in update.13 for AmberTools20 (Fri Jan 15 2021 - 12:28:26 PST)
Hector A. Baldoni
- Re: [AMBER] backbone rmsd between mutant trajectories, comparing conformational space sampled (Tue Jan 12 2021 - 08:44:05 PST)
- Re: [AMBER] How does the xleap/teap recognize the H3O+ (hydronium) ions? (Wed Jan 06 2021 - 19:11:18 PST)
Hongwei Tan
- Re: [AMBER] Error searching for compatible GPU (Sun Jan 10 2021 - 16:50:33 PST)
- [AMBER] Error searching for compatible GPU (Sun Jan 10 2021 - 00:29:22 PST)
Jatin Kashyap
- Re: [AMBER] Reproducing Tutorial: Analysis of a nucleic acid simulation (Mon Jan 18 2021 - 17:40:11 PST)
- Re: [AMBER] Reproducing Tutorial: Analysis of a nucleic acid simulation (Mon Jan 18 2021 - 16:48:50 PST)
- Re: [AMBER] Reproducing Tutorial: Analysis of a nucleic acid simulation (Mon Jan 18 2021 - 16:06:35 PST)
- Re: [AMBER] Reproducing Tutorial: Analysis of a nucleic acid simulation (Mon Jan 18 2021 - 15:47:58 PST)
- Re: [AMBER] Reproducing Tutorial: Analysis of a nucleic acid simulation (Mon Jan 18 2021 - 15:32:45 PST)
- [AMBER] Reproducing Tutorial: Analysis of a nucleic acid simulation (Mon Jan 18 2021 - 15:17:02 PST)
- [AMBER] MD GPU Scaling Performance (Thu Jan 07 2021 - 14:38:26 PST)
- Re: [AMBER] NaN VDWAALS Error During Minimization (Thu Jan 07 2021 - 11:29:05 PST)
- Re: [AMBER] NaN VDWAALS Error During Minimization (Tue Jan 05 2021 - 22:28:52 PST)
- Re: [AMBER] NaN VDWAALS Error During Minimization (Tue Jan 05 2021 - 21:09:59 PST)
- Re: [AMBER] NaN VDWAALS Error During Minimization (Tue Jan 05 2021 - 19:53:29 PST)
- Re: [AMBER] NaN VDWAALS Error During Minimization (Tue Jan 05 2021 - 19:18:47 PST)
- [AMBER] NaN VDWAALS Error During Minimization (Tue Jan 05 2021 - 16:55:17 PST)
Jenny 148
- [AMBER] Fwd: Distance of every c alpha in a protein to every other c alpha (Mon Jan 25 2021 - 02:11:00 PST)
- [AMBER] Distance of every c alpha in a protein to every other c alpha (Sun Jan 17 2021 - 21:50:28 PST)
K Jan
- Re: [AMBER] RMSD analysis (Thu Jan 07 2021 - 15:26:14 PST)
- [AMBER] RMSD analysis (Thu Jan 07 2021 - 14:34:51 PST)
- Re: [AMBER] Sander code doesn’t output trajectory files (Wed Jan 06 2021 - 07:13:49 PST)
- Re: [AMBER] Sander code doesn’t output trajectory files (Wed Jan 06 2021 - 06:57:16 PST)
- [AMBER] Sander code doesn’t output trajectory files (Wed Jan 06 2021 - 04:58:23 PST)
Kehinde Idowu
- [AMBER] Error in minimization (Thu Jan 28 2021 - 13:06:05 PST)
- [AMBER] DNA-ligand simulation (Thu Jan 14 2021 - 16:33:20 PST)
Kenneth Huang
- Re: [AMBER] Non zero ligand warning (Sun Jan 31 2021 - 10:14:48 PST)
- Re: [AMBER] Suggestions on crossing energy barrier to break strong HBs (Sat Jan 30 2021 - 17:10:10 PST)
- Re: [AMBER] Can we perform combined clustering with multiple prmtop files and mdcrd files? (Fri Jan 29 2021 - 09:51:32 PST)
- Re: [AMBER] Help to generate prmtop and .crd files from a PDB trajectory (Tue Jan 26 2021 - 11:55:43 PST)
- Re: [AMBER] Non-integer/zero charges from RESP fitting? (Wed Jan 13 2021 - 10:50:29 PST)
- [AMBER] Non-integer/zero charges from RESP fitting? (Tue Jan 12 2021 - 11:18:04 PST)
- Re: [AMBER] Fwd: Creating a bond in leap (Mon Jan 11 2021 - 14:03:23 PST)
- Re: [AMBER] RMSD analysis (Thu Jan 07 2021 - 14:45:09 PST)
Lennart Gundelach
- Re: [AMBER] Python Error in MMPBSA.py, only for PBSA on final output (Fri Jan 22 2021 - 04:22:07 PST)
- Re: [AMBER] Python Error in MMPBSA.py, only for PBSA on final output (Sat Jan 16 2021 - 02:14:54 PST)
- [AMBER] Python Error in MMPBSA.py, only for PBSA on final output (Wed Jan 13 2021 - 01:43:07 PST)
Li,Haoxi
- Re: [AMBER] MMPBSA.py.MPI not build in Amber20 (Fri Jan 08 2021 - 14:05:16 PST)
- Re: [AMBER] MMPBSA.py.MPI not build in Amber20 (Mon Jan 04 2021 - 09:13:32 PST)
Liao
- [AMBER] Langevin thermostat different gamma_ln giving systematically different energies? (Sat Jan 16 2021 - 17:44:16 PST)
Lillian Chong
- [AMBER] ff15ipq-m force field for protein mimetics (Tue Jan 12 2021 - 05:46:41 PST)
liu kai
- Re: [AMBER] Fixed the problem of AMBER20 run with pmemd.cuda with CUDA11.1 and 3080 GPU card (Sat Jan 02 2021 - 18:35:20 PST)
Loki
- Re: [AMBER] NonUniversalWarning: Modified off-diagonal LJ parameters detected (Sat Jan 16 2021 - 09:30:12 PST)
- [AMBER] NonUniversalWarning: Modified off-diagonal LJ parameters detected (Sat Jan 16 2021 - 03:54:54 PST)
Luis Simon
- [AMBER] abmd ignores cv_min cv_max and resolution for colvar="TORSION" (Mon Jan 25 2021 - 13:03:43 PST)
- [AMBER] The long and winding STSM (Wed Jan 20 2021 - 07:56:33 PST)
Maghsoud, Yazdan
- [AMBER] CPPTRAJ error while Clustering (Fri Jan 08 2021 - 08:08:27 PST)
Mani Radh
- [AMBER] overall and internal correlation function (Mon Jan 25 2021 - 09:48:12 PST)
Maria Nagan
- Re: [AMBER] LEaP Error/questions. (Mon Jan 11 2021 - 09:37:46 PST)
Mateusz Bieniek
- [AMBER] Bug in the Mol2 format: space converted into a new oxygen atom (Wed Jan 06 2021 - 06:40:28 PST)
Matthew Guberman-Pfeffer
- Re: [AMBER] Setting PME cutoff in Crystal Simulations (Wed Jan 06 2021 - 00:33:05 PST)
- Re: [AMBER] Setting PME cutoff in Crystal Simulations (Tue Jan 05 2021 - 19:03:59 PST)
- Re: [AMBER] Setting PME cutoff in Crystal Simulations (Tue Jan 05 2021 - 01:37:22 PST)
- [AMBER] Energy Evaluations (Mon Jan 04 2021 - 20:51:42 PST)
- [AMBER] How to apply GLYCAM Parameters (Sun Jan 03 2021 - 12:45:07 PST)
- [AMBER] Setting PME cutoff in Crystal Simulations (Sun Jan 03 2021 - 12:37:09 PST)
mish
- Re: [AMBER] Nvidia RTX 3080/3090 Servers (Fri Jan 22 2021 - 06:16:34 PST)
- [AMBER] Nvidia RTX 3080/3090 Servers (Thu Jan 21 2021 - 18:48:54 PST)
Mohd Farid Ismail
- Re: [AMBER] Fixed the problem of AMBER20 run with pmemd.cuda with CUDA11.1 and 3080 GPU card (Fri Jan 01 2021 - 16:54:56 PST)
MYRIAN TORRES RICO
- [AMBER] question (Thu Jan 21 2021 - 03:05:45 PST)
- Re: [AMBER] gaff/parm (Thu Jan 14 2021 - 05:50:01 PST)
- [AMBER] gaff/parm (Thu Jan 14 2021 - 01:36:10 PST)
- Re: [AMBER] error job (Thu Jan 14 2021 - 00:36:31 PST)
- Re: [AMBER] error job (Tue Jan 12 2021 - 09:20:44 PST)
- Re: [AMBER] error job (Tue Jan 12 2021 - 07:10:57 PST)
- Re: [AMBER] error job (Tue Jan 12 2021 - 06:38:11 PST)
- Re: [AMBER] error job (Tue Jan 12 2021 - 01:02:25 PST)
- [AMBER] error job (Mon Jan 11 2021 - 03:09:58 PST)
- Re: [AMBER] error... (Mon Jan 04 2021 - 02:09:35 PST)
- Re: [AMBER] error... (Sun Jan 03 2021 - 11:43:56 PST)
- [AMBER] error... (Sun Jan 03 2021 - 09:19:00 PST)
- Re: [AMBER] doubt frames simulation (Sat Jan 02 2021 - 06:01:08 PST)
- [AMBER] doubt frames simulation (Sat Jan 02 2021 - 05:00:50 PST)
nguerin
- [AMBER] Understanding File Format Specifications (Fri Jan 22 2021 - 12:48:45 PST)
- [AMBER] antechamber assigns DU as atom type for nitrogen (Sat Jan 16 2021 - 19:47:04 PST)
Nicy yadav
- [AMBER] pdb4amber error (Mon Jan 25 2021 - 08:24:33 PST)
- Re: [AMBER] Creating input files using tleap (Wed Jan 20 2021 - 06:26:08 PST)
- [AMBER] Creating input files using tleap (Tue Jan 19 2021 - 14:27:00 PST)
Pau Mayorga Delgado
- [AMBER] Amber 16/cpptraj diffusion command (Mon Jan 25 2021 - 00:37:48 PST)
Pengfei Li
- Re: [AMBER] Tri-coordination environment in zinc (Sat Jan 16 2021 - 19:29:17 PST)
- Re: [AMBER] lj1264 in vacuum (Sat Jan 16 2021 - 19:21:56 PST)
Pinky Mazumder
- [AMBER] in chimera, which one should I use for carbohydrates (Fri Jan 29 2021 - 07:38:28 PST)
- Re: [AMBER] max pairlist cutoff must be less than unit cell max sphere radius! (Thu Jan 28 2021 - 10:31:52 PST)
- [AMBER] max pairlist cutoff must be less than unit cell max sphere radius! (Wed Jan 27 2021 - 13:49:22 PST)
- [AMBER] How to pull two group of atoms in two different direction? (Sun Jan 24 2021 - 16:23:33 PST)
- [AMBER] vlimit exceeded for step 0; vmax = 50.6241 (Tue Jan 19 2021 - 13:50:09 PST)
- [AMBER] How to apply Compressive loading on wood (Sat Jan 16 2021 - 18:55:54 PST)
- Re: [AMBER] Steered molecular dynamics Simulation (Sat Jan 16 2021 - 13:37:28 PST)
- Re: [AMBER] How to use GLYCAM_06j-1 in LAMMPS (Sat Jan 16 2021 - 13:35:18 PST)
- Re: [AMBER] Steered molecular dynamics Simulation (Sat Jan 16 2021 - 10:13:35 PST)
- Re: [AMBER] Steered molecular dynamics Simulation (Fri Jan 15 2021 - 18:01:53 PST)
- [AMBER] How to use GLYCAM_06j-1 in LAMMPS (Fri Jan 15 2021 - 15:43:05 PST)
- Re: [AMBER] Pull group of atoms together (Tue Jan 12 2021 - 11:59:22 PST)
- Re: [AMBER] Pull group of atoms together (Tue Jan 12 2021 - 11:30:16 PST)
- Re: [AMBER] Pull group of atoms together (Tue Jan 12 2021 - 08:38:42 PST)
- [AMBER] Pull group of atoms together (Mon Jan 11 2021 - 10:34:11 PST)
- [AMBER] How to pull/push group of atoms (Sat Jan 09 2021 - 21:06:06 PST)
- [AMBER] How to apply shear loading on carbohydrates (Fri Jan 08 2021 - 21:11:18 PST)
- [AMBER] how to pull group of atoms towards a fixed molecule using Steered molecular dynamics simulation (Fri Jan 08 2021 - 17:11:43 PST)
- Re: [AMBER] cif to pdb (Tue Jan 05 2021 - 23:07:49 PST)
- [AMBER] cif to pdb (Mon Jan 04 2021 - 20:19:22 PST)
raissa.conceicao.bol.com.br
- Re: [AMBER] Energy minimization script (Fri Jan 22 2021 - 12:14:00 PST)
- [AMBER] Energy minimization script (Fri Jan 22 2021 - 05:45:00 PST)
Ray Luo
- Re: [AMBER] Python Error in MMPBSA.py, only for PBSA on final output (Sat Jan 16 2021 - 17:48:43 PST)
- Re: [AMBER] Python Error in MMPBSA.py, only for PBSA on final output (Wed Jan 13 2021 - 09:10:46 PST)
Renato Araujo
- Re: [AMBER] PrmtopError: Complex natom != receptor natom + ligand natom (Tue Jan 26 2021 - 08:56:11 PST)
- [AMBER] PrmtopError: Complex natom != receptor natom + ligand natom (Mon Jan 25 2021 - 17:49:58 PST)
richa anand
- [AMBER] Running simulations (Sun Jan 24 2021 - 22:41:53 PST)
Roitberg,Adrian E
- Re: [AMBER] Reproducing Tutorial: Analysis of a nucleic acid simulation (Mon Jan 18 2021 - 16:40:00 PST)
- Re: [AMBER] Sander code doesn’t output trajectory files (Wed Jan 06 2021 - 07:00:44 PST)
Ross Walker
- Re: [AMBER] Nvidia RTX 3080/3090 Servers (Fri Jan 22 2021 - 06:03:53 PST)
Sadaf Rani
- Re: [AMBER] how to get amber 18 tools (Wed Jan 27 2021 - 06:44:55 PST)
- [AMBER] how to get amber 18 tools (Wed Jan 27 2021 - 04:25:11 PST)
- Re: [AMBER] MMPBSA calculation cpptraj failed with ligand prmtop (Sun Jan 24 2021 - 21:03:10 PST)
- Re: [AMBER] MMPBSA calculation cpptraj failed with ligand prmtop (Sun Jan 24 2021 - 20:47:03 PST)
- [AMBER] MMPBSA calculation cpptraj failed with ligand prmtop (Wed Jan 20 2021 - 21:13:09 PST)
- Re: [AMBER] working with mmpbsa with protein and three ligands in same complex (Tue Jan 19 2021 - 22:42:20 PST)
- [AMBER] working with mmpbsa with protein and three ligands in same complex (Sun Jan 17 2021 - 02:36:31 PST)
Sam Walsworth (Researcher)
- Re: [AMBER] LEaP Error/questions. (Fri Jan 15 2021 - 12:58:57 PST)
- Re: [AMBER] LEaP Error/questions. (Fri Jan 15 2021 - 10:58:38 PST)
- Re: [AMBER] LEaP Error/questions. (Wed Jan 13 2021 - 12:41:01 PST)
- Re: [AMBER] LEaP Error/questions. (Wed Jan 13 2021 - 07:06:44 PST)
- Re: [AMBER] LEaP Error/questions. (Wed Jan 13 2021 - 06:38:33 PST)
- Re: [AMBER] LEaP Error/questions. (Wed Jan 13 2021 - 05:27:55 PST)
- Re: [AMBER] LEaP Error/questions. (Wed Jan 13 2021 - 04:30:36 PST)
- Re: [AMBER] LEaP Error/questions. (Tue Jan 12 2021 - 05:11:39 PST)
- Re: [AMBER] LEaP Error/questions. (Tue Jan 12 2021 - 04:18:08 PST)
- Re: [AMBER] LEaP Error/questions. (Mon Jan 11 2021 - 12:58:04 PST)
- Re: [AMBER] LEaP Error/questions. (Mon Jan 11 2021 - 09:10:26 PST)
- Re: [AMBER] LEaP Error/questions. (Mon Jan 11 2021 - 05:45:18 PST)
- [AMBER] LEaP Error/questions. (Mon Jan 11 2021 - 03:45:14 PST)
Scott Brozell
- Re: [AMBER] pdb4amber error (Tue Jan 26 2021 - 22:37:06 PST)
Sebastian Oleksy
- [AMBER] OPC monovalent ion parameters (Mon Jan 25 2021 - 10:07:26 PST)
Setyanto Md
- Re: [AMBER] Fixed the problem of AMBER20 run with pmemd.cuda with CUDA11.1 and 3080 GPU card (Sun Jan 03 2021 - 23:47:14 PST)
spss4.iacs.res.in
- Re: [AMBER] Fwd: Error during amber16 installation (Thu Jan 21 2021 - 20:59:09 PST)
- [AMBER] Fwd: Error during amber16 installation (Thu Jan 21 2021 - 02:29:46 PST)
Stejskal, Lenka
- [AMBER] Cpptraj (Thu Jan 21 2021 - 07:14:43 PST)
Stephan Schott
- Re: [AMBER] Lateral movement of membrane bound protein during MD simulation in Amber (Mon Jan 11 2021 - 03:21:37 PST)
Syeda Amna Arshi
- [AMBER] PROTEIN-DNA RMSD plots (Thu Jan 14 2021 - 03:14:05 PST)
- Re: [AMBER] PROTEIN-DNA rmsd plot (Mon Jan 04 2021 - 22:23:40 PST)
- Re: [AMBER] PROTEIN-DNA rmsd plot (Mon Jan 04 2021 - 00:56:57 PST)
Tabassum Khair Barbhuiya
- [AMBER] ZAFF force field (Wed Jan 20 2021 - 17:09:11 PST)
Tarsis
- [AMBER] GB pairwise decomposition - Salt Bridge (Wed Jan 06 2021 - 06:28:57 PST)
Thomas Cheatham
- Re: [AMBER] Understanding File Format Specifications (Fri Jan 22 2021 - 14:03:52 PST)
- Re: [AMBER] Langevin thermostat different gamma_ln giving systematically different energies? (Sat Jan 16 2021 - 18:23:48 PST)
- Re: [AMBER] DNA-ligand simulation (Thu Jan 14 2021 - 16:41:40 PST)
- Re: [AMBER] NaN VDWAALS Error During Minimization (Tue Jan 05 2021 - 20:39:56 PST)
- Re: [AMBER] NaN VDWAALS Error During Minimization (Tue Jan 05 2021 - 20:33:17 PST)
tluchko
- Re: [AMBER] Errors whilst installing GPU Amber20 (Wed Jan 13 2021 - 09:06:03 PST)
Vaibhav Dixit
- Re: [AMBER] backbone rmsd between mutant trajectories, comparing conformational space sampled (Mon Jan 11 2021 - 22:52:25 PST)
- [AMBER] backbone rmsd between mutant trajectories, comparing conformational space sampled (Sun Jan 10 2021 - 22:59:49 PST)
Victoria E Hill
- Re: [AMBER] Errors whilst installing GPU Amber20 (Wed Jan 13 2021 - 09:41:58 PST)
- Re: [AMBER] Errors whilst installing GPU Amber20 (Wed Jan 13 2021 - 09:05:35 PST)
- [AMBER] Errors whilst installing GPU Amber20 (Wed Jan 13 2021 - 03:58:43 PST)
- [AMBER] Fwd: Creating a bond in leap (Mon Jan 11 2021 - 13:37:33 PST)
Vlad Cojocaru
- Re: [AMBER] Extending DNA structure (Tue Jan 19 2021 - 01:39:58 PST)
Женя Елизарова
- [AMBER] Number of na, cl ions (Thu Jan 14 2021 - 08:10:11 PST)
Игорь Злотников
- Re: [AMBER] technical problems with installing amber20 (Wed Jan 27 2021 - 12:29:34 PST)
- [AMBER] technical problems with installing amber20 (Wed Jan 27 2021 - 04:59:02 PST)
Юлия Беляева
- [AMBER] tinker_to_amber (Tue Jan 05 2021 - 11:16:01 PST)
东庚
- [AMBER] Preparation of input file for RAMD (Geng Dong) (Sun Jan 10 2021 - 20:11:12 PST)
吴晓东
- [AMBER] Question of targeted molecular dynamics simulation (Thu Jan 14 2021 - 18:37:16 PST)
孙天宇
- [AMBER] How to use AM1 for Ti atom in Amber? (Sun Jan 10 2021 - 21:28:23 PST)
辛志宏
- [AMBER] How to fix the issue of generating restart file from a trajectory? (Wed Jan 27 2021 - 20:00:04 PST)
- [AMBER] How to extract restart file with velocity from a trajectory file? (Fri Jan 22 2021 - 06:19:42 PST)
- [AMBER] Issue about the generaton of rst files (Tue Jan 12 2021 - 04:33:44 PST)
- [AMBER] Issue about the generaton of rst files (Sun Jan 10 2021 - 06:41:11 PST)

Amber Archive Jan 2021 by author