[AMBER] in chimera, which one should I use for carbohydrates

From: Pinky Mazumder <pmazumder67.gmail.com>
Date: Fri, 29 Jan 2021 09:38:28 -0600

Dear AMBER Users,

I have loaded a crystal.pdb of carbohydarte in ucsf chimera, if I want to
write the prmtop file, what force field should i use? In AMBER xleap, I
use GLYCAM_06j-1.

But in chimera, which one should I use for carbohydrates?

There are 6 options, AMBER ff14SB, AMBER ff03ua, AMBER ff03.r1, AMBER
ff02pol.r1, AMBER ff99SB, ff99bsc0.

Thanks in advance!


Pinky Mazumder
PhD Student
University of Alabama
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Received on Fri Jan 29 2021 - 08:00:02 PST
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