On Fri, Jan 29, 2021, Pinky Mazumder wrote:
>
>I have loaded a crystal.pdb of carbohydarte in ucsf chimera, if I want to
>write the prmtop file, what force field should i use? In AMBER xleap, I
>use GLYCAM_06j-1.
>
>But in chimera, which one should I use for carbohydrates?
You won't be able to build the prmtop file in Chimera. Take you pdb file
and use tleap/xleap in Amber for this. You could then load that prmtop
file into Chimera if you need to.
....dac
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Received on Fri Jan 29 2021 - 10:00:02 PST
