On Sun, Jan 10, 2021, Athena N wrote:
>
>I wanted to know if it is possible to find the distances between 2 nuclease
>domains in protein using AMBER.
See the "distance" action in cpptraj. You'll have to decide exactly what
distance you want, e.g. distance between the centers, closest contact
distances, et.
> Also if we have to find the non covalent
>parameters of protein and nucleic acid in a RNP, could we use mmpbsa?
I'm not sure what you mean by the phrase "non covalent parameters".
...dac
_______________________________________________
AMBER mailing list
AMBER.ambermd.org
http://lists.ambermd.org/mailman/listinfo/amber
Received on Sun Jan 10 2021 - 05:30:04 PST
