Amber Archive Nov 2020: by subject

[AMBER] a metal bound Met
- Wu Xu (Fri Nov 20 2020 - 07:55:42 PST)
- Pengfei Li (Fri Nov 20 2020 - 07:25:39 PST)
[AMBER] ABMD NFE queries
- Victor Jun Yu Lim (Wed Nov 18 2020 - 01:40:38 PST)
[AMBER] Addition of polyatomic ions in Leap
- Bill Ross (Mon Nov 09 2020 - 06:54:22 PST)
- David A Case (Mon Nov 09 2020 - 05:40:09 PST)
- MADHUSMITA DEVI (Sun Nov 08 2020 - 20:57:21 PST)
[AMBER] AMBER 18 cuda installation error
- accuratefreeenergy.gmail.com (Mon Nov 30 2020 - 05:06:20 PST)
- Mariangela Dametto (Mon Nov 30 2020 - 04:25:25 PST)
- David A Case (Fri Nov 27 2020 - 05:14:08 PST)
- Tru Huynh (Wed Nov 25 2020 - 14:40:24 PST)
- Mariangela Dametto (Wed Nov 25 2020 - 11:24:35 PST)
[AMBER] Amber 18 GPU installation error
- Nagakumar Bharatham (Sun Nov 22 2020 - 23:13:30 PST)
- Nagakumar Bharatham (Thu Nov 19 2020 - 00:56:13 PST)
[AMBER] Amber 20 make install problem
- David A Case (Sat Nov 21 2020 - 05:39:53 PST)
- Bruno Cramer (Fri Nov 20 2020 - 06:13:41 PST)
[AMBER] Amber 20 on AMD ryzen + Nvidia 30XX
- Jason Swails (Thu Nov 19 2020 - 16:34:20 PST)
- Charo del Genio (Fri Nov 13 2020 - 04:17:28 PST)
- Jordi Bujons (Wed Nov 11 2020 - 05:47:18 PST)
- Raman Preet Singh (Sun Nov 08 2020 - 23:20:57 PST)
- Charo del Genio (Sun Nov 08 2020 - 13:26:56 PST)
- Robert Konecny (Sun Nov 08 2020 - 13:08:59 PST)
- Jordi Bujons (Sun Nov 08 2020 - 10:20:17 PST)
[AMBER] Amber20 and RNA simulations
- Piia Kokkonen (Tue Nov 10 2020 - 04:38:25 PST)
[AMBER] AMBER20 TI calculations
- Adrian Roitberg (Fri Nov 27 2020 - 09:21:09 PST)
- Debarati DasGupta (Fri Nov 27 2020 - 09:15:49 PST)
[AMBER] AMBER20, ff19SB and OPC
- Carlos Simmerling (Fri Nov 20 2020 - 04:24:18 PST)
- Liao (Sat Nov 14 2020 - 11:07:40 PST)
- Carlos Simmerling (Sat Nov 14 2020 - 10:38:52 PST)
- Stephan Schott (Sat Nov 14 2020 - 10:20:43 PST)
- Kanin Wichapong (Fri Nov 13 2020 - 02:57:49 PST)
[AMBER] Ambertools20 installation
- David A Case (Thu Nov 05 2020 - 13:56:47 PST)
- Hrvoje Brkić (Thu Nov 05 2020 - 07:31:41 PST)
[AMBER] AMORPHOUS HEMICELLULOSE
- Pinky Mazumder (Sat Nov 07 2020 - 10:22:44 PST)
[AMBER] An error during NPT/production (GPU run)
- Женя Елизарова (Sun Nov 29 2020 - 22:09:24 PST)
- David A Case (Sun Nov 29 2020 - 10:39:39 PST)
- Женя Елизарова (Sat Nov 28 2020 - 00:10:09 PST)
- David A Case (Fri Nov 27 2020 - 05:04:41 PST)
- Женя Елизарова (Thu Nov 26 2020 - 10:05:33 PST)
[AMBER] antechamber error -sqm.out missing
- David A Case (Sat Nov 21 2020 - 05:53:17 PST)
- Bruno Cramer (Sat Nov 21 2020 - 04:58:27 PST)
[AMBER] Antechamber permissions issue
- Sam Walsworth (Researcher) (Mon Nov 30 2020 - 03:23:56 PST)
- Sam Walsworth (Researcher) (Mon Nov 30 2020 - 02:48:13 PST)
- Sam Walsworth (Researcher) (Mon Nov 30 2020 - 02:22:36 PST)
- David A Case (Fri Nov 27 2020 - 14:10:34 PST)
- Sam Walsworth (Researcher) (Fri Nov 27 2020 - 06:37:44 PST)
- David A Case (Fri Nov 27 2020 - 04:57:29 PST)
- Sam Walsworth (Researcher) (Thu Nov 26 2020 - 09:37:18 PST)
[AMBER] Antechamber: Charge and dihedral issues
- David A Case (Mon Nov 16 2020 - 05:17:02 PST)
- Salman Zarrini (Fri Nov 13 2020 - 11:44:43 PST)
[AMBER] Aqvist force field for magnesium
- Pengfei Li (Fri Nov 20 2020 - 08:32:28 PST)
- Jenny 148 (Sun Nov 01 2020 - 00:09:52 PDT)
[AMBER] Changes in DNA sugar chilarity at NMR volume restrained simulation
- David A Case (Thu Nov 12 2020 - 05:27:06 PST)
- lomzov (Wed Nov 11 2020 - 21:45:02 PST)
[AMBER] cpptraj donor/acceptor definitions
- Gustaf Olsson (Mon Nov 23 2020 - 08:22:49 PST)
- Daniel Roe (Mon Nov 23 2020 - 06:56:08 PST)
- Gustaf Olsson (Mon Nov 23 2020 - 06:51:37 PST)
- Gustaf Olsson (Mon Nov 23 2020 - 06:25:26 PST)
- Daniel Roe (Mon Nov 23 2020 - 05:50:11 PST)
- Gustaf Olsson (Mon Nov 23 2020 - 00:11:56 PST)
- Daniel Roe (Fri Nov 20 2020 - 08:13:27 PST)
- Gustaf Olsson (Thu Nov 19 2020 - 02:46:00 PST)
- Daniel Roe (Wed Nov 18 2020 - 06:06:44 PST)
- Gustaf Olsson (Wed Nov 18 2020 - 04:42:45 PST)
[AMBER] CPPTRAJ printout auto-detected hbond donor/acceptor
- Gustaf Olsson (Tue Nov 10 2020 - 23:46:37 PST)
- Daniel Roe (Tue Nov 10 2020 - 06:26:32 PST)
- Gustaf Olsson (Mon Nov 09 2020 - 00:45:26 PST)
- Gustaf Olsson (Mon Nov 09 2020 - 00:40:53 PST)
- Daniel Roe (Fri Nov 06 2020 - 05:53:37 PST)
- Gustaf Olsson (Fri Nov 06 2020 - 01:24:28 PST)
[AMBER] CPPTRAJ returns 'Warning: Box center specified but no box information'
- Daniel Roe (Tue Nov 10 2020 - 06:20:54 PST)
- Ikuo KURISAKI (Mon Nov 09 2020 - 22:35:21 PST)
[AMBER] Discrepancy between interaction energy of amber coordinate trajectories of a system
- Carlos Simmerling (Mon Nov 09 2020 - 06:51:55 PST)
- Prathit Chatterjee (Sun Nov 08 2020 - 19:41:40 PST)
- Carlos Simmerling (Sat Nov 07 2020 - 06:44:44 PST)
- Bill Ross (Sat Nov 07 2020 - 05:28:00 PST)
- Prathit Chatterjee (Sat Nov 07 2020 - 05:19:17 PST)
[AMBER] Effective Way To Perform Molecular Dynamics Simulation
- Carlos Simmerling (Sun Nov 29 2020 - 03:32:53 PST)
- Erdem Yeler (Sat Nov 28 2020 - 15:20:56 PST)
[AMBER] error input
- David A Case (Thu Nov 12 2020 - 05:34:03 PST)
- MYRIAN TORRES RICO (Thu Nov 12 2020 - 01:16:32 PST)
- David A Case (Wed Nov 11 2020 - 19:30:32 PST)
- Carlos Simmerling (Wed Nov 11 2020 - 08:35:16 PST)
- MYRIAN TORRES RICO (Wed Nov 11 2020 - 08:23:59 PST)
- David A Case (Wed Nov 11 2020 - 05:44:02 PST)
- MYRIAN TORRES RICO (Wed Nov 11 2020 - 04:31:12 PST)
[AMBER] Error while running MMGBSA
- David A Case (Tue Nov 03 2020 - 06:01:37 PST)
- Suchetana Gupta (Mon Nov 02 2020 - 22:26:07 PST)
[AMBER] fail when run pmem.cuda
- Carlos (Sun Nov 29 2020 - 21:56:43 PST)
- David A Case (Sun Nov 29 2020 - 10:35:13 PST)
- Carlos (Sat Nov 28 2020 - 01:04:07 PST)
[AMBER] FES (Ferredoxin) Amber Parameters
- Maghsoud, Yazdan (Tue Nov 10 2020 - 06:50:46 PST)
[AMBER] FEW: Linear interaction energy calculations.
- M RCC (Fri Nov 06 2020 - 03:55:46 PST)
[AMBER] FINAL RESULT MMPBSA QUERY
- Ray Luo (Wed Nov 18 2020 - 21:47:25 PST)
- Manisha (Tue Nov 17 2020 - 23:57:31 PST)
[AMBER] Fwd: Antechamber: Charge and dihedral issues
- Salman Zarrini (Sun Nov 15 2020 - 10:46:12 PST)
[AMBER] Fwd: System blows up when simulating under npt
- Bill Ross (Wed Nov 25 2020 - 18:12:04 PST)
- Carlos Simmerling (Wed Nov 25 2020 - 09:21:19 PST)
- Amit Sharma (Asstt. Prof., MCARS) (Wed Nov 25 2020 - 09:15:47 PST)
[AMBER] GAFF.dat format: what does the second numeric column mean?
- Zhu Liang (Sat Nov 14 2020 - 10:58:05 PST)
- Stephan Schott (Sat Nov 14 2020 - 09:46:35 PST)
- Zhu Liang (Sat Nov 14 2020 - 09:35:40 PST)
[AMBER] Help for building cross linking polymer using graphic antechamber
- aishen (Wed Nov 11 2020 - 00:27:39 PST)
- Gustaf Olsson (Tue Nov 10 2020 - 23:56:21 PST)
- Pinky Mazumder (Tue Nov 10 2020 - 19:06:02 PST)
[AMBER] Help in amber TI automation script
- Delwakkada Liyanage, Senal Dinuka (Tue Nov 24 2020 - 12:29:52 PST)
[AMBER] Help on understanding the errors
- Ayesha Fatima (Fri Nov 06 2020 - 03:21:18 PST)
- Ayesha Fatima (Fri Nov 06 2020 - 03:14:36 PST)
- Bill Ross (Fri Nov 06 2020 - 03:06:43 PST)
- Ayesha Fatima (Fri Nov 06 2020 - 03:02:13 PST)
- Dr. Anselm Horn (Fri Nov 06 2020 - 02:48:47 PST)
- Ayesha Fatima (Fri Nov 06 2020 - 00:23:22 PST)
[AMBER] Help with parameterization of non-standard amino acid
- Pengfei Li (Fri Nov 20 2020 - 08:24:41 PST)
- Dr. Anselm Horn (Fri Nov 06 2020 - 02:15:24 PST)
- Carlos Simmerling (Thu Nov 05 2020 - 10:04:43 PST)
- Dr. Anselm Horn (Thu Nov 05 2020 - 03:50:06 PST)
- Carlos Simmerling (Wed Nov 04 2020 - 08:58:12 PST)
- Amit Sharma (Asstt. Prof., MCARS) (Wed Nov 04 2020 - 08:22:54 PST)
- David A Case (Wed Nov 04 2020 - 05:15:40 PST)
- Amit Sharma (Asstt. Prof., MCARS) (Wed Nov 04 2020 - 01:30:31 PST)
[AMBER] How can I solve the high RMS problem?
- David A Case (Sun Nov 29 2020 - 10:45:07 PST)
- 변진영 (Wed Nov 18 2020 - 22:50:09 PST)
[AMBER] how find Es from mdout to estimate vertical energy gap
- Vaibhav Dixit (Sat Oct 31 2020 - 23:05:54 PDT)
[AMBER] How to correct the H atom direction in the HIE residue?
- 辛志宏 (Sat Nov 14 2020 - 05:24:07 PST)
- Gustavo Seabra (Fri Nov 13 2020 - 10:50:15 PST)
- Carlos Simmerling (Fri Nov 13 2020 - 10:47:23 PST)
- Gustavo Seabra (Fri Nov 13 2020 - 10:42:49 PST)
- Abdul-Rashid III Sampaco (Fri Nov 13 2020 - 10:32:27 PST)
- Song, Lin (Fri Nov 13 2020 - 08:47:44 PST)
- Carlos Simmerling (Fri Nov 13 2020 - 05:45:39 PST)
- 辛志宏 (Fri Nov 13 2020 - 05:41:02 PST)
[AMBER] How to introduce repulsive force between ligands during simulation?
- 钟海洋 (Fri Nov 13 2020 - 23:49:58 PST)
[AMBER] installation issues with cuda 11.1
- Demian Riccardi (Tue Nov 03 2020 - 10:16:57 PST)
[AMBER] Installing AmberTools20 compile error
- Lennart Gundelach (Wed Nov 25 2020 - 04:47:32 PST)
- David A Case (Tue Nov 24 2020 - 05:13:11 PST)
- Lennart Gundelach (Mon Nov 23 2020 - 22:55:45 PST)
[AMBER] installing pmemd.cuda (Amber20, WSL2)
- Lucy Yang (Thu Nov 05 2020 - 23:35:54 PST)
- Lucy Yang (Thu Nov 05 2020 - 20:46:31 PST)
[AMBER] iwrap/autoimage - analyses
- Gustaf Olsson (Wed Nov 11 2020 - 00:27:10 PST)
- Daniel Roe (Tue Nov 10 2020 - 06:19:32 PST)
- Gustaf Olsson (Tue Nov 10 2020 - 03:13:26 PST)
[AMBER] jupyter notebook
- Hai Nguyen (Mon Nov 23 2020 - 17:59:56 PST)
- Elvis Martis (Thu Nov 19 2020 - 00:35:30 PST)
- aishen (Wed Nov 18 2020 - 23:18:17 PST)
[AMBER] MCBP.py errors
- Pengfei Li (Fri Nov 20 2020 - 08:13:53 PST)
- Seibold, Steve Allan (Mon Nov 16 2020 - 14:57:00 PST)
[AMBER] md simulation error
- David A Case (Sun Nov 29 2020 - 10:19:59 PST)
- Kehinde Idowu (Sat Nov 28 2020 - 11:34:22 PST)
- David A Case (Fri Nov 27 2020 - 14:14:23 PST)
- Kehinde Idowu (Fri Nov 27 2020 - 08:41:08 PST)
[AMBER] mdgx 'File not found' on macOS
- h.jolon.icloud.com (Thu Nov 19 2020 - 06:52:32 PST)
- h.jolon.icloud.com (Thu Nov 19 2020 - 06:44:22 PST)
[AMBER] MM/PBSA after minimization
- Elvis Martis (Mon Nov 02 2020 - 17:35:08 PST)
- h_sahakyan.mb.sci.am (Mon Nov 02 2020 - 11:12:00 PST)
[AMBER] MMGBSA/MMPBSA Help
- Abdul-Rashid III Sampaco (Sun Nov 01 2020 - 21:07:56 PST)
[AMBER] MMPBSA.py bad atom type: M1 error
- Vaibhav Dixit (Mon Nov 16 2020 - 01:23:00 PST)
[AMBER] MMPBSA.py: "fork()" system call to create a child process
- David A Case (Tue Nov 24 2020 - 07:52:02 PST)
- Lennart Gundelach (Mon Nov 23 2020 - 23:02:44 PST)
[AMBER] MMPBSA/GBSA
- Bill Ross (Fri Nov 06 2020 - 03:18:14 PST)
- Manisha (Fri Nov 06 2020 - 03:11:36 PST)
[AMBER] molecule twisted in QM/MM simulation
- Goetz, Andreas (Sat Nov 21 2020 - 12:49:42 PST)
- Qinghua Liao (Sat Nov 21 2020 - 12:32:04 PST)
- David A Case (Thu Nov 19 2020 - 08:00:25 PST)
- Qinghua Liao (Thu Nov 19 2020 - 04:26:01 PST)
[AMBER] NMR restraints
- Debarati DasGupta (Mon Nov 02 2020 - 14:21:27 PST)
- Debarati DasGupta (Mon Nov 02 2020 - 14:19:50 PST)
- David A Case (Mon Nov 02 2020 - 04:19:40 PST)
- Debarati DasGupta (Sun Nov 01 2020 - 06:19:14 PST)
[AMBER] NOE analysis with cpptraj
- Daniel Roe (Wed Nov 25 2020 - 07:24:11 PST)
[AMBER] Partial Charge with RESP (antechamber)
- Michele Vanini (Fri Nov 27 2020 - 01:12:37 PST)
- Dr. Anselm Horn (Fri Nov 27 2020 - 00:36:54 PST)
- David Cerutti (Thu Nov 26 2020 - 18:24:54 PST)
- Michele Vanini (Thu Nov 26 2020 - 09:53:57 PST)
[AMBER] PCA with multiple peaks
- Abhilash J (Tue Nov 03 2020 - 13:34:42 PST)
[AMBER] phi angle puckering
- MYRIAN TORRES RICO (Tue Nov 24 2020 - 00:45:52 PST)
[AMBER] phi cremer
- Daniel Roe (Fri Nov 27 2020 - 12:05:00 PST)
- MYRIAN TORRES RICO (Wed Nov 25 2020 - 08:20:50 PST)
- Daniel Roe (Wed Nov 25 2020 - 07:09:20 PST)
- MYRIAN TORRES RICO (Mon Nov 23 2020 - 04:26:51 PST)
[AMBER] Prmtop for protein + 2 identical ligands has wrong dihedral parameters for the second ligand. LEaP bug?
- Pengfei Li (Fri Nov 20 2020 - 07:14:22 PST)
[AMBER] Problem with acpype
- Pengfei Li (Fri Nov 20 2020 - 08:37:36 PST)
[AMBER] Program received signal SIGSEGV: Segmentation fault - invalid memory reference
- David A Case (Mon Nov 02 2020 - 17:58:54 PST)
- Sarah Jane (Mon Nov 02 2020 - 16:39:05 PST)
[AMBER] protein domain "broken"
- koushik kasavajhala (Mon Nov 09 2020 - 01:00:20 PST)
- koushik kasavajhala (Mon Nov 09 2020 - 00:53:57 PST)
- MYRIAN TORRES RICO (Mon Nov 09 2020 - 00:52:22 PST)
- Dr. Anselm Horn (Fri Nov 06 2020 - 08:05:07 PST)
- MYRIAN TORRES RICO (Fri Nov 06 2020 - 04:39:16 PST)
- Carlos Simmerling (Fri Nov 06 2020 - 04:12:02 PST)
- MYRIAN TORRES RICO (Fri Nov 06 2020 - 04:11:56 PST)
- Dr. Anselm Horn (Fri Nov 06 2020 - 03:49:45 PST)
- MYRIAN TORRES RICO (Fri Nov 06 2020 - 03:21:48 PST)
- MYRIAN TORRES RICO (Fri Nov 06 2020 - 03:20:18 PST)
- Dr. Anselm Horn (Fri Nov 06 2020 - 03:03:22 PST)
- Bill Ross (Fri Nov 06 2020 - 03:03:02 PST)
- MYRIAN TORRES RICO (Fri Nov 06 2020 - 02:45:06 PST)
[AMBER] protein domain "broken"m
- koushik kasavajhala (Mon Nov 09 2020 - 00:59:00 PST)
[AMBER] protein folding
- Carlos Simmerling (Thu Nov 05 2020 - 08:38:04 PST)
- h_sahakyan.mb.sci.am (Thu Nov 05 2020 - 08:20:43 PST)
[AMBER] Protein preparation error
- Ayesha Fatima (Fri Nov 06 2020 - 10:31:20 PST)
- Ayesha Fatima (Fri Nov 06 2020 - 09:02:26 PST)
- David A Case (Fri Nov 06 2020 - 08:50:04 PST)
- Ayesha Fatima (Fri Nov 06 2020 - 08:05:23 PST)
[AMBER] Protein-nucleic acid interactions
- Bill Ross (Mon Nov 02 2020 - 22:23:00 PST)
- Athena N (Mon Nov 02 2020 - 21:20:10 PST)
[AMBER] pytraj
- Hai Nguyen (Mon Nov 23 2020 - 10:47:07 PST)
- Hai Nguyen (Mon Nov 23 2020 - 10:28:51 PST)
- Pietro ARONICA (Mon Nov 23 2020 - 02:16:28 PST)
- Hai Nguyen (Thu Nov 19 2020 - 06:43:48 PST)
- Pietro ARONICA (Wed Nov 18 2020 - 20:22:27 PST)
- Hai Nguyen (Wed Nov 18 2020 - 16:26:28 PST)
- Pietro ARONICA (Wed Nov 18 2020 - 09:03:45 PST)
[AMBER] Query about generated (.pdb) files from GLYCAM Carbo builder
- Gustaf Olsson (Tue Nov 10 2020 - 23:51:49 PST)
- Pinky Mazumder (Tue Nov 10 2020 - 11:51:59 PST)
[AMBER] question about gaps
- Gordon Richard Chalmers (Sun Nov 29 2020 - 10:41:30 PST)
- David A Case (Sun Nov 29 2020 - 10:26:03 PST)
- Gordon Richard Chalmers (Sat Nov 28 2020 - 19:43:05 PST)
[AMBER] Question about the 'softcore part' of outputfile in pmemd
- wangjianing_mail (Wed Nov 04 2020 - 03:09:37 PST)
[AMBER] Question about the outfile of 'softcore part'
- wangjianing_mail (Wed Nov 04 2020 - 03:08:36 PST)
[AMBER] Question again
- Paul Keller (Thu Nov 19 2020 - 23:42:28 PST)
[AMBER] Regarding to the parameters setup in SMD simulation
- 辛志宏 (Sat Nov 21 2020 - 00:35:00 PST)
[AMBER] RESTARTED DUE TO LINMIN FAILURE ...
- David A Case (Mon Nov 02 2020 - 04:22:52 PST)
- Sadaf Rani (Sun Nov 01 2020 - 07:21:01 PST)
[AMBER] Saving pdb as parm7/prmtop file with boundary conditions
- Gustaf Olsson (Thu Nov 05 2020 - 03:17:09 PST)
- Aashish Shivkumar (Thu Nov 05 2020 - 00:11:04 PST)
[AMBER] Screenshots for publications
- David A Case (Mon Nov 02 2020 - 04:23:34 PST)
- Gustaf Olsson (Mon Nov 02 2020 - 02:05:28 PST)
[AMBER] System blows up when simulating under npt
- Carlos Simmerling (Wed Nov 25 2020 - 07:18:07 PST)
- Daniel Roe (Wed Nov 25 2020 - 07:12:26 PST)
- Carlos Simmerling (Tue Nov 24 2020 - 04:41:13 PST)
- Amit Sharma (Asstt. Prof., MCARS) (Tue Nov 24 2020 - 03:44:21 PST)
- Juraj Dobias (Tue Nov 24 2020 - 03:35:06 PST)
- Carlos Simmerling (Tue Nov 24 2020 - 03:09:42 PST)
- Amit Sharma (Asstt. Prof., MCARS) (Tue Nov 24 2020 - 03:04:38 PST)
[AMBER] System preparation for MMPBSA.py
- Pengfei Li (Fri Nov 20 2020 - 08:02:16 PST)
- David A Case (Thu Nov 05 2020 - 05:37:10 PST)
- SATYAJIT KHATUA (Wed Nov 04 2020 - 23:08:48 PST)
- David A Case (Wed Nov 04 2020 - 05:09:15 PST)
- SATYAJIT KHATUA (Tue Nov 03 2020 - 21:49:38 PST)
- David A Case (Tue Nov 03 2020 - 05:57:32 PST)
- SATYAJIT KHATUA (Mon Nov 02 2020 - 21:53:40 PST)
[AMBER] Tail-to-tail peptide linker?
- David A Case (Sun Nov 22 2020 - 05:57:30 PST)
- Alexander Izvorski (Sat Nov 21 2020 - 21:53:50 PST)
[AMBER] thermal averaging of properties
- Vaibhav Dixit (Wed Nov 18 2020 - 06:24:34 PST)
- David A Case (Wed Nov 18 2020 - 06:19:19 PST)
- Vaibhav Dixit (Tue Nov 17 2020 - 18:58:11 PST)
[AMBER] TI electrostatic free energy
- David A Case (Mon Nov 30 2020 - 10:10:18 PST)
- Franz Waibl (Mon Nov 30 2020 - 06:34:44 PST)
[AMBER] TI lambda scheduling file examples
- Debarati DasGupta (Mon Nov 16 2020 - 13:12:38 PST)
[AMBER] TI-Amber
- Ankita Tripathi (Tue Nov 17 2020 - 04:27:45 PST)
- Giorgos Lambrinidis (Mon Nov 16 2020 - 00:18:42 PST)
- Ankita Tripathi (Sun Nov 15 2020 - 11:31:58 PST)
- Giorgos Lambrinidis (Sun Nov 15 2020 - 11:21:24 PST)
- Ankita Tripathi (Sat Nov 14 2020 - 11:51:10 PST)
- Ankita Tripathi (Thu Nov 12 2020 - 05:19:31 PST)
[AMBER] tinker_to_amber
- Emmett Leddin (Wed Nov 25 2020 - 12:37:14 PST)
- Michael Sonny Miller (Thu Nov 19 2020 - 13:47:09 PST)
[AMBER] Tri-coordination environment in zinc
- SATYAJIT KHATUA (Sat Nov 21 2020 - 02:01:29 PST)
- Pengfei Li (Fri Nov 20 2020 - 07:42:47 PST)
- SATYAJIT KHATUA (Mon Nov 02 2020 - 21:06:14 PST)
- Bill Ross (Sun Nov 01 2020 - 10:35:31 PST)
- SATYAJIT KHATUA (Sun Nov 01 2020 - 09:38:42 PST)
[AMBER] Ubuntu version compatible for gpu installation of AMBER 18
- aishen (Thu Nov 19 2020 - 03:57:12 PST)
- Jenny 148 (Thu Nov 19 2020 - 02:26:57 PST)
[AMBER] Understanding restraint files generated from CHARMM-GUI
- David A Case (Mon Nov 02 2020 - 13:19:20 PST)
- Souvik Dey (Mon Nov 02 2020 - 11:05:45 PST)
[AMBER] Unsupported Cuda Version on Amber 20 Installation
- Setyanto Md (Fri Nov 20 2020 - 06:59:42 PST)
- David A Case (Fri Nov 20 2020 - 04:58:36 PST)
- Setyanto Md (Thu Nov 19 2020 - 20:08:29 PST)
- David A Case (Thu Nov 19 2020 - 18:24:01 PST)
- Setyanto Md (Thu Nov 19 2020 - 15:35:15 PST)
- viktor (Wed Nov 18 2020 - 06:31:08 PST)
- David A Case (Wed Nov 18 2020 - 06:30:05 PST)
- Setyanto Md (Wed Nov 18 2020 - 03:57:36 PST)
[AMBER] using bridgebyatom keyword
- Daniel Roe (Sat Nov 07 2020 - 04:54:43 PST)
- Samuel Holmes (Thu Nov 05 2020 - 10:22:47 PST)
[AMBER] Using the rep.C0.pdb as a reference structure in RMSD analysis
- Daniel Roe (Wed Nov 25 2020 - 07:18:33 PST)
- Soheila Shokrollahzade (Tue Nov 24 2020 - 07:56:42 PST)
[AMBER] vlimit=10 compromise for Amber 20 error: "an illegal memory access was encountered launching kernel kClearForces"?
- Carlos Simmerling (Mon Nov 23 2020 - 04:43:06 PST)
- Liao (Sun Nov 22 2020 - 22:20:25 PST)
- David A Case (Sun Nov 22 2020 - 18:17:23 PST)
- Liao (Sun Nov 22 2020 - 16:20:43 PST)
- Carlos Simmerling (Fri Nov 20 2020 - 14:29:53 PST)
- Liao (Fri Nov 20 2020 - 13:18:33 PST)
AMBER20 TI calculations
- Debarati DasGupta (Fri Nov 27 2020 - 09:52:37 PST)
protein folding
- h_sahakyan.mb.sci.am (Fri Nov 06 2020 - 06:02:34 PST)

Amber Archive Nov 2020 by subject